BtaINT0081089 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34328703-34329199:-
Coord C1 exon
chr3:34329094-34329199
Coord A exon
chr3:34328841-34329093
Coord C2 exon
chr3:34328703-34328840
Length
253 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TTTGTCTGTCTTGGGTTCAGGGT
3' ss Score
9.06
Exon sequences
Seq C1 exon
ACCTCCACAGTCAGTGATGGCAGACACAGAGAACAAAGAGGTGGCCAGAATCACGTTTGTCTTTGAGACCATCTGTTCTGTGAACTGCGAGCTCTACTTCATGGTG
Seq A exon
GTATGTTTTCCTTCCTTTGTCTGCTTTGGGGCTTCCGGGAAGGCTGGCCCCTCTGCCCTGTTGGTGCATCAACATAACTGACATCCCTGCTTACAGTGATTTTGCAGACAAGGAGCCAACTATTTGTCAGGGACTGCACCATTTAATATGGGTCTAGCCCACTGTGATGGCCCCCAGGATGGCAGCGGTATGGGCACCCTCTCCCCAGTTGCCCAGCCATCATGCCTTCTTCATTTGTCTGTCTTGGGTTCAG
Seq C2 exon
GGTGTGAATTCTAGGACCAACAGTCCTGTGGAGACGTGGAAAGGTTCTAAAGGCAAACAGTCTTATACCTACATCATCGAGGAGAATGCTACCATGAGCTTCACCTGGGCCTTCCAGAGGACAACTTTCCATGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136:ENSBTAT00000001511:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCAGTGATGGCAGACAC
R:
TCTCATGGAAAGTTGTCCTCTGG
Band lengths:
236-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]