GgaINT1016100 @ galGal4
Intron Retention
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1132434-1132747:+
Coord C1 exon
chr26:1132434-1132539
Coord A exon
chr26:1132540-1132609
Coord C2 exon
chr26:1132610-1132747
Length
70 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CCCCGTGCTGTCCCTTCCAGGGC
3' ss Score
11.85
Exon sequences
Seq C1 exon
CCCCCCGCAGCCGGCGCTGGAGGATGGGGACAGCAAGGAGGTGGCGCGGATTACCTTCGTCTTCGAGACGGTCTGCAGCGTCAGCTGTGAGCTGTACTTCATGGTG
Seq A exon
GTGAGTGGTGGTGGGGGGGGGCGCGGCGGGGGGCGCGGGGTGCCCACATCCCCCGTGCTGTCCCTTCCAG
Seq C2 exon
GGCATCAACTCACGCACCAACACGCCGGTGGAGACGTGGACGGGCCCCCGGGGGAAGCAGTCCTACACTTACGTGGTGGAGAAGAATGCCACCACCAGCTTCACCTGGGCCTTCCAGCGCACGCGCTACCGCGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986:ENSGALT00000043678:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGGATTACCTTCGTCTTC
R:
GTGAAGCTGGTGGTGGCATTC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]