HsaINT0086681 @ hg38
Intron Retention
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr1:109191366-109191863:+
Coord C1 exon
chr1:109191366-109191471
Coord A exon
chr1:109191472-109191725
Coord C2 exon
chr1:109191726-109191863
Length
254 bp
Sequences
Splice sites
5' ss Seq
GTGGTACGT
5' ss Score
8.61
3' ss Seq
CTTGTCTGTCCTGGGTTCAGGGT
3' ss Score
8.49
Exon sequences
Seq C1 exon
ACCTCCGCAGTCGGTGATGGCAGACACAGAGAATAAAGAGGTGGCCAGAATCACATTTGTCTTTGAGACCCTCTGTTCTGTGAACTGTGAGCTCTACTTCATGGTG
Seq A exon
GTACGTTTTCCTTTCTTTGCCCGCTAGAGGGCCTCCAGGGGAGGGTTAGCCCCATCTGCCCCATTGGTGTGTCCACGTGACTGACACCCCCCCTTGTAGTGATTCCACAGAGGAAAGGCCCAGACTGACCAGCAGGGACTTCACAGTTTAACAAGGGTCTCACCAACCGTGATGGCACCTGGGATGGCAGCCACATGGGCACCCACTTCCCCTCTGGCCATCGCACCCGCTTCACTTGTCTGTCCTGGGTTCAG
Seq C2 exon
GGTGTGAATTCTAGGACCAACACTCCTGTGGAGACGTGGAAAGGTTCCAAAGGCAAACAGTCCTATACCTACATCATTGAGGAGAACACTACCACGAGCTTCACCTGGGCCTTCCAGAGGACCACTTTTCATGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299:ENST00000369936:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCGGTGATGGCAGACAC
R:
TGCCTCATGAAAAGTGGTCCT
Band lengths:
237-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development