BtaINT0081097 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34315387-34316464:-
Coord C1 exon
chr3:34316286-34316464
Coord A exon
chr3:34315553-34316285
Coord C2 exon
chr3:34315387-34315552
Length
733 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
CCCATTCCCTTGTTTCATAGGCT
3' ss Score
9.15
Exon sequences
Seq C1 exon
AAGACTACTTACGTGTGGCGAGAACCAAAGCTGTGCTCCGGTGGCATCTCCCTGCCTGAGCAGAGAGTCACCATCTGCAAAACGATAGACTTCTGGCTGAAAGTGGGCATCTCTGCAGGCACCTGCACCGCCATCCTGCTCACTGTCTTGACCTGTTACTTTTGGAAAAAGAATCAAAA
Seq A exon
GTATGTGATGGGTTTGGGGATGGCCAGGGCTGGACTGTTGAGCTGGAAGGAGAGTATCTGAGAGTATAAATTCACACGGCTGCTCTTTGGTATTGGCTACAGTCCCTGTGACTCTGGCCAGAGGCTTGTCGAGCTACTCATCCAGGATATGCCTTGGTTATCCTGACTCCTAGGGGCTTCCCCAGTGGCTCAGCAGTAAAGAATCTGCCTGCTATACAGGAGACATGGGTTCAGTTCCTCCAGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAAGGGAGCCTGGTGGACTACAGTCCATGGGGTCACAAAGAGTCAGACACAACTGAAGTGATTCAGCACACACATACGCACCTCAACTCCTAACAGGGATGGTACCACATGGCAGTCTATGAAAAGCTGTTAGATGTCAAAAGAAATGCAAAAAGAATTATTAATTTGCTATTATTAATGGTAAAAATGGTTTTACAGTTTCATGATTTCTGTTCAGCTTTGAGATCATAGAAACACCTAGATTTAAGAGAAAAGATCCTTGACTTGGGAATCAGATTCCCTAGCCAAATCCCCGGCCTAACACCATTTTGCTACGTTTCAGTTCCATCACCCATGGTAAGGGAATATCTCCTTTTAGCCCAACCTTTCTCCTTTTCCTTTTATTACAGTTTGGTGTCTTGTCTTCCCCATTCCCTTGTTTCATAG
Seq C2 exon
GCTAGAGTACAAGTACTCCAAGCTGGTGATGAATGCTACCCTCAAGGACTGTGACCTACCAGCCGCTGACAGCTGTGCCATCATGGAAGGCGAGGACGTGGAGGATGACCTCATCTTTACCAGCAAAAAGTCACTCTTTGGGAAGATCAAATCATTTACCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136:ENSBTAT00000001511:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTACTTACGTGTGGCGAGA
R:
TGGAGGTAAATGATTTGATCTTCCCA
Band lengths:
342-1075
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]