DreINT0136743 @ danRer10
Intron Retention
Gene
ENSDARG00000042899 | si:ch211-163l21.8
Description
si:ch211-163l21.8 [Source:ZFIN;Acc:ZDB-GENE-041008-93]
Coordinates
chr8:23784362-23786278:+
Coord C1 exon
chr8:23784362-23784540
Coord A exon
chr8:23784541-23786112
Coord C2 exon
chr8:23786113-23786278
Length
1572 bp
Sequences
Splice sites
5' ss Seq
CAAGTTAGA
5' ss Score
-0.24
3' ss Seq
TGTCCCTGTCCTCTCTCTAGGCT
3' ss Score
12.3
Exon sequences
Seq C1 exon
AGGACGACGTATGTCTGGCAGCAGCCTCTGAGGTGTACAGGCGGTGTGTCTCTGCCTCCTCTGAAGATCAGTACCTGCGTGACGCTCGACTTCTGGCTCAAGTTTGGGGTCTCCATTGGAACTGTGGCCGCCGTGTTGCTCATTACCATCAGCTGCTACTTCTGGAAAAGGACACGCAA
Seq A exon
GTTAGAGGCAGTTTACTTCAGGAGCTTATCGTATTCTACATGTTTAAATAATGTAAAATCACATCCATATTTTGATGAAATATCTAGAAACAGAAGGTTTTAGGTGTGAGACAAAATAAGATGAAATAGGTTTGGTTTCATTTGATCTAATGAAAATGTTAAGAAAGAAGGGTCATGTGATGTACATTCTAAAAACATTTTTGGTGTACAGTTGAGGTCAGAATAATTAGCCCCCTTTAATCTTTTTTTTTTCTATTTTAAATATTTCCCAAATTATGTTTAACAGAGCCAGGAAATTTTTACAGTATATCTGATAATATTTTTTCTTCTGGAAAAAGTCTTATTTGTTTTATTTCGGCTATAATAAAAGCAGTTTTTTAATTTTTTAAAACATTTTTAAAACATTCTTGAAAAATATCTAGTCAAATTTTATGGAGCAAATTTTAGTCGCCACCACGGCGACTGAAGCTCTGCACAAGACTTTTGGCCAGCGGAGAAATTAAAATGGTCGTGCCCAACTGAGTCTTGTTCTCTCAAGGTTTTTTTTCTTCACTCCCATCAGGTGAAGTTTTTTTTTCCCTCTCCGCTGTCGCCACTGGCTCGCATGGTTCAGGATTGGTAGAGCTACACATCGATGAATTTGCTCCTCAGTGTTTGAACTCTCAGTAATGATTAAATCACACTGAACTGAGCTAAACTGAACTGAACTTAAACACTAAAAAACTGAACTACACTGTTCCAGTTACTATGACCATTTATGTGAAGCTGCTTTGACACAATCGACATTGTAAAAGCGCTATACAAATAAAGCTGAATTGAATTGAATTGAATGTACTGTCGCCATGGCCAAGATAAAATAAATCAGTTATTAGAAATGAGTTATTAAAACTATTATGTTTAGAAATGTGTTGAGAAAATCTTCTCTCAGTTAAATAAAAATTAGGGGAAAAAATAAATAGGGCTAATAATTCAGAGGAATAATAATTCTGACTTCAACTGTATTTCAACACAAATTTGGGTAAAATATGGACAAAACATTTTGTTGGGTTACATTGTTAAATAAAAAAATAATATTTTTTTAGTAGTTTACTTAAGTAAATATAGTTTACTTAAATTTGTAATTAAAAAGCCTAGCATTTTTAGAGTGTAAGTTTAAAAAGGTGGATATATTTTGCACAATATTTCTAAATAATACTAATAAAAGTACTATTCTAGTAGTATTTGTTAAAGCCTAGTCGTTATTCTAACAATATCAGCATGAGAAATGAATCACTAAACCCATCAGTCATAGATGCTATACTAGTAATTCCAACATACGAAATAAATATATTATAACATTTAGTTTTTTCTGTATTTTGGTTTAAATAACTGAATGAACTTATAAATCATAATGCAATGAATCCAAGAATAAAATCATAGCTTTATGACCCACTGACTTGCTGAACCCAAGACAAATATATACTTCCAAATATGTATATGAATGACTTCTGTTATCTTTATAATTGCAAATAAGCTGTTAATTAATAGGGTCTGCTGTGTGAGAGTATAAGAGTGTCCCTGTCCTCTCTCTAG
Seq C2 exon
GCTTCAGTATAAGTACTCCAAGCTCATGATGACAGCAGGAGATAAAGAGTGTGAGCTTCCAGCAGCCGACAGCTGTGCCATTATGGAGGGAGAAGATGCAGAGGATGACCTCATCTACCTCTCCAAAAAACCCTTCTTCAGGAAAATCAAGTCCTTTTCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042899:ENSDART00000137820:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACGACGTATGTCTGGCAG
R:
TCTCTGGAAAAGGACTTGATTTTC
Band lengths:
344-1916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]