GgaINT0113153 @ galGal3
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8118532-8121544:+
Coord C1 exon
chr1:8118532-8118710
Coord A exon
chr1:8118711-8121378
Coord C2 exon
chr1:8121379-8121544
Length
2668 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTATGGCTTCCTGTCTTCAGGCT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GAAACCTTGTATGTATGGAATGAGCCGAAGCATTGCATTAAAGGGGTTCCCTTGCCAGAGAAAAGGACCAGCACTTGTGAAACGGTGGATTTTTGGCTAAAGGTTGGAGCTGGTGTGGGTGCTTTCGCTGCTGTTCTGCTGATAGCCTTGACCTGCTATTTTTGGAAGAAGAACCAGAA
Seq A exon
GTAAGTGCTGCAACTTGTGTTGCATATAAAAGTGAGCTTGATGTATTGAACAAAAACATGTTTCATGGATCTGACCTCATGACAATGTTGATGAAAAATGCCATGCTTGATCAGTTTGTTGATCGACCAAGCTGAGTTTTCAAAAATCCTAGAATGAAAAATATAGAAAATCCCCGATAATCTGTTACAGGATGATTTCCTGACAGGAGCTGTCTTTTTAACCCTTAAGAGTTTGAGGTTGACTAAGTCCTGAAGCAACATGGTTTTCTCAAGGTATGAAGACCGAAAGGGTATTTCTTTATTCTAACTCGTACCTTTCAGCAGGACTTCAGACAATGTAAATTATAAAATATTTGAAAAGGGGATATTTGTAAAAAAAAAAACAAAAAACAAAAGCAAAGAAACAACAACAAAAACCCAACTAAAAGAATACCTGTATGGCTTCCTGTCTTCTGGCTGGAGTATAAATATTCCAAATTGGTGATGACAGCGAACTCAAAAGAGTGTGAGCTGCAGCTGCTGACAGTGTGCTATATGGGAGGGGGAAGAATAATGAAGAAAGAAANNNNNNNNNNTAATTAGTACTATTAATACTAAAAATAATTATTACCATTATTTATCACTGGATGTGATGAGGCTGTGATGCTAATTTCCACAGTGCTTTGTGTAGCCTCCAGCACACACATCACCCAGTTTGCTCTCAACCTGCTGAAATCCACAATGTGAGTAATGATAAATGTTTCAGGGAATTAAAGAAACGCTTCTTCTTCTGCAGGGAGCTTCCTGAAGCATTCTTTATTGTATGGGCCGTGTCTAAAAAGAGGCACGGGAAACCTTCTGGATTCTTACCAGATACCTCCACTGAAGCAAACACAGCTATTATAGATACAGGAAATAAACATCAGAACAGCAATCAGTCAGCTGCTTCCCCCTCACCTGGGCTGACTTCATGGCTGACTTGAGAGACATAATGTTCAGGATTATAGTATTCAGATGAAGAGAAGCATCAGCTAAAGCCCATCACCCAATACAGCAACCTCCTCCATTTTGTTGGAGAGCAATAGCACTGAGCATTTTTTTGCAGCATGTGATGCAGCGTTGTTATATGTTTGAATTTCTAGCACAAAGGTCTTTTATGTCCTTTGATTATTTCTCATAGGGACAACAGAGGGCTGTCATGGTAGATCCCACAGGCATTTTCATCTTTTTCCAAATGCTTTGCAGTCGGTGGGAAAGTTGGTGTTGTCTTTAAGGGAGTCCAGCTGGGGCATCTGTTATTACAGGAAAAAGGTGGATGACATTTTCCCTTTCACACAGTTCTGCTGAAGAGAGTTGTTTCCAAATAAGAAGGTTTCTTCAACAGTAATAATACAAAGAATCTTTTGAAAAGCGACTTTTTTGTTTCTTGCCTACATGGTATTTCAGAAAGTTGAATTTGGGGATTTTTTTCTCATATTCTTTGTTTTCCTTTCTGTAATTGAGTGCAATGCAACGTAACTGTGTGTCTTTTCTTTCCCTTATTTTTCCTTTCTCTTGACTGTCTTCAATTTTTATTAGAGTGCTTTTCTCTTTCCACCTAAGTGTTCCCCAGATCTCCCTCCAAGGACATGGTAAACAGCTAATGTGCAGAACTTCTTCTTGCCCCCACCTTGACTATTTGTCTTGTAAAGTCAGTACCTTTCCTTGTGGAAAGGTGAAAAAATGTAATGCTAAGGATTTTGAAAATGTAAATAAAATGAAAGCACATCAAATTTTGTGCAGCTTTTTACAACAATGGAAGTAGATTCCATTTTGAATCCTGCAGGAATAACTTTCCCGTAGAACTTTGTAGGATATAGGATGGTATTTTTTTGTACATGAAATGGCTTGGCTGGCTGTGGCTGGGCGTGATGACCAGTGCTGCTGAGGGTTATGTTTTGCTTTACGCTTGATAACTGTAAAAGCTTTGCTGACTCAATTTGCAGCACCAACCACTGGCTTCTGCCTGATTAGAAGTATAGAGATGAGAGTGTGGGAGAAAAGTTGTTTTTTTTTTCCCTTTTCTTTTTCTTTAAAGTAAGCTTTAGTGCTATAGTATTTAGACCACTTGAATGGAAAGAAACTCCAAAAGAGTTTTTTAAAGTTTCTACATCCATTGTAACAGGCTCCCTGAGTATTCTCTCCTTTTTAAAAAGCCTGTCAGATATTTCTAAGCTGACTCCTTTTTTTCCTACTAGATAATCGTAGCTGGCAAAGTCAGCTTACAGTACCTCATNNNNNNNNNNAGTGAGCTTGATGTATTGAACAAAAACATGTTTCATGGATCTGACCTCATGACAATGTTGATGAAAAATGCCATGCTTGATCAGTTTGTTGATCGACCAAGCTGAGTTTTCAAAAATCCTAGAATGAAAAATATAGAAAATCCCCGATAATCCTTTACAGGATGATTTCCTGACAGGAGCTGTCTTTTTAACCCTTAAGAGTTTGAGGTTGACTAAGTCCTGAAGCAACATGGTTTTCTCAAGGTATGAAGACCAAAAGGGTACCTTTCAGCAGGACTTCAGACAATGTAAATTATAAAATATTTGAAAAGGGGATATTTGTAAAAAAAAAACAAAAAACAAAAGCAAAGAAACAACAACAAAAACCCAACTAAAAGAATACCTGTATGGCTTCCTGTCTTCAG
Seq C2 exon
GCTGGAGTATAAATATTCCAAATTGGTGATGACAGCGAACTCAAAAGAGTGTGAGCTGCCAGCTGCTGACAGTTGTGCTATAATGGAGGGGGAAGATAATGAAGAAGAAATAGTATATTCTAATAAGCAGTCACTGCTGGGGAAGCTCAAGTCCTTGGCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]