HsaINT0086711 @ hg19
Intron Retention
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:21945]
Coordinates
chr7:86521040-86522416:-
Coord C1 exon
chr7:86522238-86522416
Coord A exon
chr7:86521206-86522237
Coord C2 exon
chr7:86521040-86521205
Length
1032 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTATTTTATCACTATTTAGACT
3' ss Score
6.17
Exon sequences
Seq C1 exon
GAAACCTTGTATGTGTGGAATGAACCTAAATGGTGCATTAAAGGAATTTCTTTGCCTGAGAAAAAGTTGGCAACCTGTGAAACGGTTGACTTTTGGCTGAAGGTGGGAGCCGGTGTGGGAGCTTTTACTGCCGTTTTGCTGGTGGCTCTGACCTGCTACTTCTGGAAAAAGAATCAAAA
Seq A exon
GTAAGTACCCTCTGAGATGATCACAAGAGAGCTAGAGGGCCTATTTTGTTGTGAAAATTCTAGACTTGATCATTATATCCAATAAATAGATTCTCTCAGAGACACAAGAATTTTCTCCTTGCGAAGAAATCATAGGAAAGGCCTTGAGAAAGCAAGCAGAGGAAACGATTGTTATTCTGACAGTAGAAAGATCATAGAACATTAGAGATCATTGAGTTAGAGTCATTTATTAGAAAACAAGGAAAACAAGAGGCTCCATGTTATTCAGGTAGATGATAGCAGAGCTGAGATTTGGAAGGCAGGTATTCTCTCAGTGTCTGCCTTTTTTAAAAATGATATAATGCTGTCTTCTTCCTTCACCTTTTCTTTTAAAATTTCTTGTGGGAAGACATTTGCAAAAAAAACCAGACCTAGTGTATAGGCAAATATCACATTTATTTACTCCAGGTCTTCAAGTATCTGGAATTGAATATTGAGCCTAATTCCTGAATGTATTTTGATCTCTTATAGGACTTGAATCTTTTAGAATGATTTACACCTCAGTGGGACTGTGGAACTCCTATATTGTAATATCTAGGGACAATTGCAATATCTGGGGTGATAGTATAAAGGAATAAATAATATAGAGAGATGATAAAGACCAAATTACTTGCCTGTTTGATATTCTCATCTTTACGAACTAAATACTGGGAAAACCTTAGTGAATTGGCTTCCAAATATTCATGTTAAGAAAATGCATTCAGGCCTAAAAGTCCCTGCCCCCCAATTTTTTCATTATTGGACAATTCAATGTAAAGTGGTAGAATTAACTCTATTGAACTGATTTCTGACATCCTGGGAAATATTTCTTTGTAAATGGTAGATACATGATAACACACATATTGCTATGGCTATAGGCTAGGGAAATTTGTTGGTGGAGCAATTATACTCCAAGTCAATTTAATGAGCTGGTATATTACCACCTAAAATAAGTATTTATTTATATTAACATAAATGGATACTTATTTGTTTATTTATTTTATCACTATTTAG
Seq C2 exon
ACTGGAATACAAATATTCCAAGTTAGTAATGACGACTAACTCAAAAGAGTGTGAACTCCCGGCTGCAGACAGTTGTGCTATCATGGAAGGAGAAGATAATGAAGAGGAAGTTGTATATTCCAATAAACAGTCACTACTAGGAAAACTCAAATCTTTGGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659-KIAA1324L:NM_001142749:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGTATGTGTGGAATGAACCT
R:
CTTGGTTGCCAAAGATTTGAGT
Band lengths:
342-1374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)