BtaINT0081119 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33753926-33755284:+
Coord C1 exon
chr4:33753926-33754104
Coord A exon
chr4:33754105-33755118
Coord C2 exon
chr4:33755119-33755284
Length
1014 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
ATATATTTACCACTACTTAGACT
3' ss Score
2.44
Exon sequences
Seq C1 exon
GAAACTTTATATGTGTGGAATGAGCCTAAGTGGTGCATTAAAGGAATTTCTTTGCCTGAGAAAAAGTTGTCAACCTGTGAAACAGTTGACTTTTGGCTAAAAGTGGGAGCAGGAGTGGGAGCTTTTACAGCCGTTTTGCTGGTGGCTCTAACTTGCTACTTCTGGAAAAAGAATCAGAA
Seq A exon
GTAAGTAACTTCCGAATAAGAATGAGGAATCTCTTTTATCGTGAAAATTTTAGGCTTAATCACCATACTCAACAATTTCTCCCAGAGCCAAAAGAAATTTCTCCTAGTTGAAAGAGTTATGGGAAAGGTCTTTAAGAAGGCAGATGGAATTGTTGTTATTCTGATAACAGAAAGACTGGAGAACATTAGAGATAATTGCACTGGACTCACTGTTTTTATGAGATAGAGAAGAACAGAGGCTCCAGGCTACTCAGGTAGATGGGAGCAGAGCTCAGAGCGAAAGGCAGATTTTCTCTGTGTGTCTATTTTATTTTCATGACATCATGCTGCCTTCTTGCCCCATCATTGTTTTTTCAGTTTATTGTGGGCAAATATTTGCAAAGAAACAGTCTAAGCATGTAGGCAAGTCTCACCTTTATTTACTCCAGGACTTCAAGGATCTGAAGTTGAGTATTGAGTCTAACTACCAATTATATATTGATACATTATATGATTAGGCTTTTTAAAAATGATTTACCTGTCAGTGGGGCTGTGAAAGTTCTTTTTTGTATTATCTAAGGACAGTTATAATCTGAGGTGGGAAACAGAAAGCAATGAGTGAAAGAAATAGTAAGACCAAATCACTTGCCTATGTACAATGTTCTCATCTTATGAAGTAAACTTTGGAAAACTGCATATTAAATTAGTTCCCAAATATTTGTAAATGATGAAAATTTATTCATACCTCTAATTTTCTCTGTCTTTCAAAAGTTTGTCACAATTGGCCACTTTATGTGATGTAAAATAAGTGTAATAGAATTAACTATATTGCACTGAGTCTCTGAAATTCTGGAAAAGCTTGGTGTATAGGTGGTAGATTAATGAGAACACACAGTGTTGCGGTGATGCGTAAAGGAAATCCGTTGGTGAAGCAACTATACTCCAAGATAATTAGCTGGTGTATGACCACCCCAAATAAGTATTAATTTATATTAAACAGCCTCTTTATCTATTTATATATTTACCACTACTTAG
Seq C2 exon
ACTGGAGTACAAATATTCCAAATTAGTAATGACTACGAACTCAAAAGAGTGTGAACTCCCAGCTGCAGACAGCTGTGCTATCATGGAAGGAGAAGATAATGAAGAGGAAGTTGTATACTCCAATAAACAGTCCCTACTGGGAAAACTCAAATCCTTGGCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023:ENSBTAT00000005255:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTATATGTGTGGAATGAGCCT
R:
CTTTGTTGCCAAGGATTTGAGT
Band lengths:
342-1356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]