DreINT0138651 @ danRer10
Intron Retention
Gene
ENSDARG00000042213 | si:ch211-233h19.2
Description
si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
Coordinates
chr18:8991291-8991719:+
Coord C1 exon
chr18:8991291-8991469
Coord A exon
chr18:8991470-8991553
Coord C2 exon
chr18:8991554-8991719
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGA
5' ss Score
3.87
3' ss Seq
TTATCTTTGAGCTCTGATAGGCT
3' ss Score
0.89
Exon sequences
Seq C1 exon
GACACAATTTATGTGTGGACTGAACCTCGGCTGTGCACCAGTGGCCTGACTCTCCCTCTGAAGAGAACGTCTCCATGTGAGGCCATTGATTTCTGGCTGAAGGTGGGCGCTGGGCTCGGGGCGTTTTGTGCTGCTCTGCTCGTCTCCCTGACCTGCTACTTTTGGAAGAAAAACAAAAA
Seq A exon
GTATGATGTGTGTTACTATTTGAGTTTTGCAAACGTTTGCCCATTTTTCTTTATTTATGCTAATTTATCTTTGAGCTCTGATAG
Seq C2 exon
GCTGGAGTATAAATATTCCAAACTAGTGATGTCTGCCAATAAAGAGTGCGAGTTACCGGCGGCCGACAGCTGTGCCATTATGGAGGGAGAAGCAGAGGAGGAAGAGGAAGCGGTTTATGCCAAGAAGTCATCCCTTCTGGCTAAGCTAAAGGCTGCTGCTACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042213:ENSDART00000145226:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTGCTGCTCTGCTCGTC
R:
AAACCGCTTCCTCTTCCTCCT
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]