BtaINT0081100 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34344620-34345304:-
Coord C1 exon
chr3:34345157-34345304
Coord A exon
chr3:34344701-34345156
Coord C2 exon
chr3:34344620-34344700
Length
456 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGC
5' ss Score
3.93
3' ss Seq
TTAAATTCCTGCTGCCTCAGGTT
3' ss Score
6.14
Exon sequences
Seq C1 exon
GTCCAAGTGGGTTCCGCTGGGAGACTATATCGCCTCCAACACAGACGAGTGCACGGCCACGCTGATGTATGCCGTCAACCTGAAGCAGTCCGGCACTGTTAACTTTGAATACTACTACCCAGACTCTAGCATCATCTTCGAGTTTTTT
Seq A exon
GTAAGCCCCTGGCTGGGGGGCAGGGGAAGGTGGGAGATAAAGACCCCATAAGGCTCAGATGCATTTACAGAAATCACACACAGTCCCGCTTGGGAAATTTTCACAGTCGTTTTTCCCTCTGGAGAGAACTGTGGTCAAAATGAGCTGAAGCTTCAAGAGTTAAAGAAAAGATGGAAGTCAAAGGATGCTGGTGGGGAACAGTACAGTCTGGGAGAGTCCTAGGTGCTTTCCCGTGTTCTGACATGAAAATAGCTCTGAGTTCTGCAACATTTCTTTAGTGTCAATGTACTGACATCCTGTGTGTGTTAACTAGCTCCTGCCCTACTTCAAGGATCATGAGTTCTGAGCTGTCTTTCTCCCATAAGAGGGACCCTGTGGAGGGCTGGTGCTTTGTGGGGTAAGACACTTGTTTCCTTATAAAGCTGAGACTCTGATCTTAAATTCCTGCTGCCTCAG
Seq C2 exon
GTTCAGAATGACCAGTGCCAGCCCAATGCAGATGACTCGAGGTGGATGAAAACCACAGAGAAAGGATGGGAATTTCACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136:ENSBTAT00000001511:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAGTGGGTTCCGCTG
R:
AATTCCCATCCTTTCTCTGTGGT
Band lengths:
222-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]