GgaINT1016112 @ galGal4
Intron Retention
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1130648-1130948:+
Coord C1 exon
chr26:1130648-1130795
Coord A exon
chr26:1130796-1130867
Coord C2 exon
chr26:1130868-1130948
Length
72 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGC
5' ss Score
3.93
3' ss Seq
TGCTGTCCCCGTCCCCATAGGTG
3' ss Score
12.57
Exon sequences
Seq C1 exon
GTCGACGTGGGTGCCGCTGGGGGATTACATCGCCTCCAACACCGATGAGTGCACGGCCACGCTGATGTACGCCGTCAGCCTGAAGCAGTCGGGCACCGTCTCCTTTGAGTACATCTACCCCGACAGCAGCATCGTCTTTGAGTTCTTT
Seq A exon
GTAAGCACGGGGTGGGGGTCCCAGGGATGCCAGGGGGGTGACCCTGTGCTGATGCTGTCCCCGTCCCCATAG
Seq C2 exon
GTGCAGAACGACCAGTGCCAGCCCACGGTGGAGGAGTCGCGCTGGATGCGCACCACGGAGAAGGGCTGGGAGTTCCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986:ENSGALT00000043678:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAACACCGATGAGTGCAC
R:
CTTCTCCGTGGTGCGCATC
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]