HsaINT0086693 @ hg19
Intron Retention
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:29618]
Coordinates
chr1:109714488-109715190:+
Coord C1 exon
chr1:109714488-109714635
Coord A exon
chr1:109714636-109715109
Coord C2 exon
chr1:109715110-109715190
Length
474 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGC
5' ss Score
5.42
3' ss Seq
CCAAACTCTTTTTATGTCAGGTT
3' ss Score
6.28
Exon sequences
Seq C1 exon
GTCCAAGTGGGTTCCCCGGGGCGACTACATCGCCTCCAACACGGACGAATGCACAGCCACACTGATGTACGCCGTCAACCTGAAGCAATCTGGCACCGTTAACTTCGAATACTACTATCCAGACTCCAGCATCATCTTTGAGTTTTTC
Seq A exon
GTAAGCCCCTGGCCAAGGTGGAGGGTGGGAGCTAAAAAGCCTCTCTGGGGTTCAGATCCGTTTGAGGAATCCATCATGAGTGTAGCCCTGCTTGGGGGAATCACTGTTGTTTTCTCTCTGGAGAGAGCTGTGGGCAAAATGAGCTGAGGCCCAGGAGGCAAGAAGAAAAGGCAAAAGTGAAAGGACTATTGGGGGAAGAATTGTCTGGCAGATTTCTAAGTGTTTTATCCAGCTCAGACATGAAAACAGCACATCTGAGTTACAAGTTATTTCTTTGGTGTCAACGCTCATTTTGTGTGTGTGACTAACTCCTGCCCTACTTTGAGGCTCATGTGTTTTGAGCTCAATCCCTAAAGGAAATTGGCAACTCTTCCCATATAAAGAAGGGCCCTCTGGAGGGCTGGTGCAATGTGGGGAAAGGTATCCATTTCCTTAGAAAGCTGAGACTCTGGTCCCAAACTCTTTTTATGTCAG
Seq C2 exon
GTTCAGAATGACCAGTGCCAGCCCAATGCAGATGACTCCAGGTGGATGAAGACCACAGAGAAAGGATGGGAATTCCACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299-KIAA1324:NM_020775:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCCGGGGCGACTAC
R:
GGAATTCCCATCCTTTCTCTGTGG
Band lengths:
214-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)