BtaINT0081418 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106368798-106370486:-
Coord C1 exon
chr11:106370382-106370486
Coord A exon
chr11:106368921-106370381
Coord C2 exon
chr11:106368798-106368920
Length
1461 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCTTGCCCTTGTGCTGCAGAAG
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTCATCCGTCAGCTGGAGAACAACATAGAAAAGACGACGATCAAGATCACCACAAGCCAAAATATCCACTTCCTGTACATGGACCTGCTGGACCACCTGAAAAAG
Seq A exon
GTGAGCCCCCTCACCCCGCATCCCAACACCTGCCGCCGCATCTTGGTTCCAGGGAACCTAACCGCGCTTGAAGGGCGGGACTCTCAGGCCCCAGGCCGTGTGCAGGACTGGGATCTCCGTGGGGGCGGGGTCCTCTAGGGCAGGGCACCCTCACACACAGGGGCAAGAGACGAATCCAGCACCCTCAGGAAGTCCCCTCACATCATCCAGGGCTAGCTGCCTCTGCACAGGCCAGCAGCCTGGGCTTGCTGCCCACTTCTTCCAAGCCAGCCCCCAGGCTCCCTGCCGAGGAGACAGGGAAGCCCCAGGGGCCTTGAGCCCTCCTAAGAGGCAAGCCCCCTTCACTGGAGGCCCCCCCAGGCCCCCACAGAGCAGAGCCCAGGCACCTGCCACAGGCCAGACGGCCAGAAGATGGAAGGAGGATAGGGCCCCTCTCTCATCTGGATGCATTCTATCCTCACAGCGGTCCCTTCTTGCATTTTTAGAACATATGCATTAAAACAATACCTCCTGTGGCCACCTGAATTTTTTCTTGGTTGCATGGCACAGCATTTGCATTCTTAGTTCCTGGACTAGGGATCAAACTGGTGCCTCCTCCAGAGGAAGCCTGGAGTCTCAACCGCTGGACCGCCAGGGTAGTCCCCACGCCCATTAAAATAAAAGAACAACTTTCTGGGAGTCCAGAGGTTAAGACTCTGTGCTCCCAATGCAGGGGCACATGTTCGATTCCTGGCCAGGGAACTAACATCCCACATGCCACGTGGCACACCCCTTCCCCCCAAAAAAGTAGACATTAAAGATACTATATATTCTTTAAAAATAAATTTTTAAAAACAGTAGAGAGTCTACATAATAGTTATCAACAACAAAATACTAACAGCTAAGGTGTCTTGGACATTTGTGAACCTGACCCTGTGTTAAATAATACATCATTCTACCATCTCAATCCATCCTGAGAGCAACCCCTTGAAAGAGCCATTATTACCTGTTACACACGGGGACACTCAGGTTAAGTGGCTTTCCTACGGTCCCACGCTAGCTGGTCAGGTTAGCCTTGGCCCTGAGTCCCGCGTCTGACCCCACACCATCTACTTCACTTCAGAGAGCAGTCAGCCTCCCGGGGCTCCAGGGGCACCTCTCAGGTAGTCGGACTCCCCATCACAACTTCTTACGAAGTGTCTCTGGGTTCTAGCCCTGGGCAGGGAGAAGTCCCCCAGCAGGAGGCCGTTTTCCCTCTCAAAACTTTCCTTTAACCTGCTTTGGGCCTTGCTGGGGCCAAAGGCCAGGCTCTACTTGTCCTCTGGGCTCACACAGTCTGGGGTGAGGAGTGGAGAGCAGGCATGGTCCACTCTGGGGGACAGAGGAGAATCAGGAAGGGGCCAGGGGAGCCAACCTGGGACGGGCCCACAGCTCCTGGGCCATCAGGTGTTCTGCCCCCCTGCCCTTGCCCTTGTGCTGCAG
Seq C2 exon
AAGCTGGCAGGATACCCCACAGAGCTGGACAAGCTGCAGAATCTCGTGACCAACTACTGCTTGGAGCTGTCGGACATGACAGTCATGTCCCAGGATGCCATGATGATTACAGATGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933:ENSBTAT00000042795:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF053358=DUF745=FE(29.6=100)
A:
NA
C2:
PF053358=DUF745=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCGTCAGCTGGAGAACA
R:
ACCTCATCTGTAATCATCATGGCA
Band lengths:
223-1684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development