HsaINT0087329 @ hg19
Intron Retention
Gene
ENSG00000213213 | KIAA1984
Description
KIAA1984 [Source:HGNC Symbol;Acc:28236]
Coordinates
chr9:139694841-139697238:+
Coord C1 exon
chr9:139694841-139694945
Coord A exon
chr9:139694946-139697115
Coord C2 exon
chr9:139697116-139697238
Length
2170 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
3' ss Seq
GAGAACCCCATTCAACACAGGTG
3' ss Score
3.67
Exon sequences
Seq C1 exon
ATCATCCGCCAGCTGGAGAACAACATCGAGAAGACAATGATCAAGATCATCACCAGCCAGAACATCCACCTGCTGTATTTGGACCTGCTGGATTATCTGAAGACA
Seq A exon
GTGAGCCCAGCGGCCCGGGAAGGGCGGGGGTCAGGGGCTGGGATCTGGGAGGGGCGGGAGCGTCCTGGGGCGGAGCCGCCCCGCACCCGCCAGGGAGAGGGAGCTCTGCCTGACCACCGGCTACGCAGGACGCCGAGGCATGTGGAAAACGTTTTTTTAAACTTCATTTTTGGCTATTCCAAAAAAGCATATCGTGGGGTATATCAGAATTCTTCGGACTTTCTTGCACGTATTAAATGATTTGGTATTGTTTGTATCTTGCCTGTCATTTTCTCATTGCCTGGGCCTCTGAGAGTCAGACAGGTCCTGCACCCTCAGAAAGTCCTTGCACCTTTGAGGGTCCGCTGGGCCTGTAAGCAGGGCTTGCTGCCGTCCCAGCCAGCCCACCCGCCCTGCTCCCTGCAGACGAGGCCAAAGGCAGCCAGCAGTCCGATTGTGAGGGAAGACCCCCTTCATGGGAGGCTGAGCACCGCCCCTCGGGCTGCCACAAAGCAGAACCTACTCCAGATGGGCTGTAGATAGGGAGAGCACAGGAGGTGCTAAGAGGAGCAACCTGTGGATGGGGCGGGGAGCCAGCTGGAAACACCCTCACCCTAAGACTGGGCAAAGGGGAGCTCTGGAGAGCCATGCTTCGGGAAGGTGACAGCATGGAAGTGCAGTTTAGGAGGAGTGGTGGACGGAGGCTGCATCGCAGCTCTTTTCCTGCTGTGGTCCCAGCCCAGGTGGCTCTCAGCACCGTCCTCTGCTTGTCCCTCTTGCCTTGGCCCCTGGTCCTATTGGCTCACCTGGAAGCCCTGCCCCTCTATGCTTCCTGGGCCCACCCCTCTCCCCACCCCTGTCCATGCCCCTCCTTCGCCTGGGTGCTTTCTGTTCCTCTGGTAGCGCCTTCTTCTGTTTAGAACATACACACTTAAAAAACAATTATTCCCGGCCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACTTGAGGTCAGGAGTTCTAGACCAGCCTGGCCAACATGGTGAAACTTCATCTCTACTAAAAATACAAAAAGTAGCCTGGCATGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCACGAGAATCACCTGAACCCAGAAGGCAGAGGTTGCTGCAAGCCGAGATCGTACCATCGCACTCCAGCCTGGGTGATAGAGTGAGATTCAGTCTCAGAACAAAGGAAAAAACAAGCAATAATTCCCATAGTCATCCATATTTTTAAAAATGAAGATTCTACACTTCTAGTTTTGTTTTTGTTTGTTTTGTTTTTTGAGATGGAGTTTCACACTGTTGCCCCAGCTGGTGTGCAGTGGTGAGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAATAGCTAGAATTACAGGCGCCCACTACCACGCCCGGCTGATTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACTATGTTGGCCAGGCTGGTCTCTAACTCCTGACCTCATGATCTGCCTGCCTCCGGCCTCCCAGTGTTGGGATTACAGGCGTGAGCCACCGCACCTGGCCTATACTTGTAGTTACAAAAAACAAACCACTATAGCAAAGCTATCCTGAGCACGTATGTACCTGGTTCTGGGCTAAATAATTCCTTTTACACTCAATTCATCCTGATGGCAACCTTCTGAACGAGCCATCATCTTACAAATGGGGACACAGAGAGATTAAGTAACTTTCCCAATGTCACACAGCTAAACTAGCTGGTCAGAAGCTGCCTTGGCCTTGAATCCTGACTCTCTGACCCCAAGCCCATGTCTTGAGCCCCTCTGTTTCACTTCAAAGCAGAACTGTCCCCAAACCTCCCCGGGTTTCAGTCAGCCTTTTCTGCAGAGCATTTCATCACAAACTCTCTCAGTCTCTCTGGGTTGTTGGACCCTAGGTGGTGAAAGAGTCCACCAGGCCAGCACTGTCCACTCCCTGTGAAACACCTTTCATCACCGTTGTGCCCAGCGGGGAGTGGGGGAGGTGGCTGGGGCCACAGAGGAGAACCTATCACTGTTCTCAGGGCTCTTAGTCGGGGGATAAAAGCTCGGGGCAACTGCAGCCCACTCTGTAGGGGCCACAAGAGAACCCCATTCAACACAG
Seq C2 exon
GTGCTGGCAGGATACCCCATTGAGCTGGACAAGCTGCAGAACCTCGTGGTCAACTACTGCTCAGAGCTGTCGGATATGAAGATCATGTCCCAAGATGCCATGATGATCACGGATGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213-KIAA1984:NM_001039374:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)