MmuINT0003724 @ mm10
Intron Retention
Gene
ENSMUSG00000026940 | Ccdc183
Description
coiled-coil domain containing 183 [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25613558-25615513:-
Coord C1 exon
chr2:25615409-25615513
Coord A exon
chr2:25613681-25615408
Coord C2 exon
chr2:25613558-25613680
Length
1728 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
GCCTTTGCCTGTCCTCATAGGTG
3' ss Score
10.99
Exon sequences
Seq C1 exon
ATTATCCGCCAACTGGAGAACAACATTGAAAAGACGGTGATCAAGATCACCACCAGCCAGAACATCCACACGCTGTACAAAGTGCTGCTGGATTACCTGAAGAAG
Seq A exon
GTAATCAGCCCCTTGGCCGGAGCCCCGCCTGCGACTCTCCTCCAGGCAGCCCGAGAGGTTGTCCTAAAGTATGTGGAAATGTACCTCTGAGAACTTCATTTTTGTTGTTCCACACAAGCATAGTATGGGCTGCACCCAGAATTTGGGCTTAAGCCTGGGCATGGTAGCACAGATATATGTATGATCTTAGCACTCAAGAGGCTAAGATGGGAAGATCCCAGGCCAGCCTGGGCTACACAGTGAAACTCTATTTCAAAAAGAGATGTGAATGATCACACACATCACAAAGTCACAGAATTCTTTCTTTTACATATGATATGGCTTAGTTTGGAACGCTGAGGGTCCAAGATGGGCCATGCCCACCCCCCATCCCCCAGGAAATCCTGTAACATGCTTCAGGAAAGACTCTTCTCCCTCTTCCCATAATATGCTGAGCACACAATCTCCTGCCCACTTTGGATCTGGCTCTCCCCTGCTTTCTACGAATCCAGGAGGAAGGAGAGACTGACCCACGGAAGTCCCAGGGAGCCACGGTCATTACTCTCACTGAGCGCACTCCCAATATGGCGCTCATAGAGCAAGAGCATCTGTAGTGGAGAAAGTGCTTCAGGGCAGCAGGGGCACCTAAGAGCACAATGGTGGACAGACCTGAAAAGGTGGCCAGGCAAAAATTAATACCCTCACCCTCACGCGAGATAGGGAGGTGAATGAGCGGCTTGGCTTGGGAGGAAGGGCCCGTGTGTGAGCAGTTACAGCAGCTTTTCCCTGCTGAGGTCACACGCCTGAGCCAGAATCTCAGTATCATGCTCTGGTCTGTCCCTCTGACCCGACCCTCATGCTGGAAGCTCAACTGGAAGCCCCCCTGTCTTTCCTATGTTCACCCCTTCCCACACCCCTTCACTGGGGTATCCTTTGTAGAACTTTCTTTCCATAACAAACACACTTGAAACAAATCCCCATGTTCAACCATACTTTTTTTTTAAATTGGCAAAGATTCAGCATGTATAGGTTTTGAAAGTAAAGTATTATCAATCCCCAGGCTGCCTTGACCATTGATGCAAGTGTGCTACCTTACAGCTCTATTCAGCCTAACAACAACCTTTGACAAAGTCAGCAACACCATTAAAGGGCTAGGTATGACCACAAGATCACAGAGCTGGCTGGTTAGAGGCGGCCTTCACTTGGAGCCCTATCTAGTTCTATGCCCACCTTTCTCTCTCTCTTTCTTAAAGATTTATTTGTTCCACTGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACACAGGACCTCTGGAAGAGCAAGCAGCCAGCGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCATACCCATCTTTCAAGCCCCTCTTTTCCACTTCAGATCAAAGATGTCCCCCAAGCAAACCCTCCTGGACTTTAGAGTTGGCCTTCGATGGGGTGGGTCTTTGAGTCATTATATCCTCTTGTCCTGGATAGTGAGAGTCATAGGTCACCAATGCCTACCCATGCTAGAACACTTCTTTCTCGTGCTCTGTACCTTGCCCAGATGCTGGGCCACAGTTGTAACCCCTATCGTGTCCTAGGGCTCACATAGTCTGAGCATGAAGGGTGGAAGAGAACCAAAAGGCCCAGGAAAGCCAGCAGTATGGGATGATGGCAGGAAAGGAATCCACGGCTTCATGACCATTTTTGCCTTTGCCTGTCCTCATAG
Seq C2 exon
GTGCTGGCAGAGTACCCCACAGAGCTAGACAAGCTCCAGAACCTGGTGGCCAACTACTGCTCGGAGCTGTCAGACATGACAGTCATGTCCCAAGATGCCATGATGATTACTGATGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940:ENSMUST00000028309:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGCCAACTGGAGAACAAC
R:
GACCTCATCAGTAATCATCATGGCA
Band lengths:
222-1950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types