BtaINT0082798 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15343851-15345836:+
Coord C1 exon
chr27:15343851-15343946
Coord A exon
chr27:15343947-15345696
Coord C2 exon
chr27:15345697-15345836
Length
1750 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CTTCTGATGTTGCCTCACAGGTA
3' ss Score
10.12
Exon sequences
Seq C1 exon
ATTTGCAAAAAGCAATATGCCTACCTTCCAAAGATGATACAAAACCAGTTTACACTGACTGTTGGATAACTGGATGGGGCTTCACAGAGGAAAAAG
Seq A exon
GTACCACATGGCATTTTATATGTTAAAACACATGGAGTAGATTTGTTTAATTGGCCTCTAAAGTTATATCCAGATTTGTGATTTTTTTCCTAACTATTCATTTCCAGATATGTATTCAGTAATTCTTGAGAAGACAGTTTTGCTTGGTCCTGGAAAAATTCATAGGGTAATCTCTTAAGCATCTTTGTTTGACTTCTCCTAAAGGATTGGTCCCATACAGGACTAACAACTTCCCCAAGCTCATCCTGTCCTCAGAATTAATAGAGTTCCCATCTCCCAAGGCCACTGTTATCCCTTGGATTAATAACCAGGAGTACAGGCAGACATGTCATCTCTCTTTCTGGAAGGTTTTTAAATCTTTTTTTAAAACACATCCTTCCTGCAACCTGGTAAAGCCTGCGAACCTCTTCTCTAATGATGCTTTTACACCCATAAATAAAACACACAGGATTACAATGAAAACCAATGAAACTGCAACTTATCAGAATACTTTGAAAATGACAGTGTTAATAGCCCAGTCGTGTCAGACTCTTTGAGACCCTTGGACTGTAGCCTGCCAGGCTCCTCTCTGTCCATGGGATTCTCCAGGCAAGAATACTAGACTTGATTGCCATGTTCTCCTCCAGGGGATCTTCCTGACCCAGGGATCACACCTGGGTCTCCTGCACTGCAGGTGTACTTTTTACCATCTGAGCCACCAGGGAAGCCCTTATTTCTTAACAATTAATGTAAATCAACTTTATTATAAATTGTATAGTTCATTCCTGCCAAATTGAAAACTATAGATTTTAAAAACTGTTTAGAATTGCAGTATAGTTGATTTACAATGTCGTGTGACTTGCTGTTATATAGCAAAGTGAATCAGTTGTACATATATCCACTCTTTCTTAGATTCTTTGCTCATAAAGGTCATTGCAGAGTATTGAGTAGCATTGCTCATACCATATAGTAGGTCCTTATTGGTTATCTATTTTATGTATAGTAGTGTGTATATGTAGATAACCAATAAGGACCTACTATATATGTTGAAGGGCTTCCCAGGTGGCATTAGGGGCAAAGAACCTGTCTGCCCAGGCAGGAGACTTAAGAGACTAGAGTTGGATCCCTGGGTCAGCAAGATCCCCTGGAGAGGACGTGGCAACCCGCTCCAGAATTCCTTCTGAGAAGAATCCCACGGACAGAGGAGCCTGGCGGGCTACAGTCCATGGGGTCACAAAGAGTAGGACTCAACTGAGCTACTGAGCACACATATGTATACTCTTTCCAGTTTTACTGAGATATAATTGACATACATGAGTGCATAAGTCTATGCTATACAGAATAATGTTTGACTTATGTATGTCGTGAAATGATCACTATTATAAATTTGGTTAGCACTCATCACCTACTACAGATGCATGTGTGCTAAGTCACTTCAGTCGTCTCTGACTCTTTGTGACCCCATGGACTGTAGCCCACCAGGCTCCTCGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTAGGTTGCAATGTCCTCCTCCAGGGGATCTTCCCGACCCAGGGATCGAACCTGCATCTCTTTTGTCTGCTACACTGGCAGGCAGGTTCTTCACCACTAGTACTACCTATGAAGCCCCTATCACAGACACAGACATACAAAAATTTTTATATGAAGAAATGACCTTCATGGAAACTTCAGCATTCTCATTTAAGACTGTAGTCTTACTTCTATATTTATTTTATTGCCTTCTTCTGATGTTGCCTCACAG
Seq C2 exon
GTAAAATCCAAAATACCCTACAAAAGGCAAATATTCCTTTGATATCAAATGAAGAATGCCAAAAAAGTTACAGAGATTATAAAATAACCAAACAGATGATCTGTGCTGGCTATAAAGAAGGAGGAAAAGATGCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501:ENSBTAT00000012503:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAAGCAATATGCCTACCTTCC
R:
TGCAGGCATCTTTTCCTCCTT
Band lengths:
230-1980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]