RnoINT0080219 @ rn6
Intron Retention
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50172222-50173964:+
Coord C1 exon
chr16:50172222-50172317
Coord A exon
chr16:50172318-50173824
Coord C2 exon
chr16:50173825-50173964
Length
1507 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
ACTTCCTGATTGCTTCATAGGTG
3' ss Score
8.81
Exon sequences
Seq C1 exon
AATTCCAAAAACCAATATGCCTGCCTTCCAAAGCTGACACAAATACAATTTATACCAACTGCTGGGTGACTGGATGGGGCTACACAAAGGAACGAG
Seq A exon
GTAAGCCTGGCATGTGGAATGTTCCTCTCTTATGTGCTAAGGTACATGGAGTAGAGCCACTCAACAACCCGTAGTCATGATCCTTCTGTAGATCCATTCAACAGCCCTTACTCATGGCCTTTCTGTTCATTCCAAAATGATCCCAAGAATATGACTTTTTTGCATTAAAAACTGATGAGCTAATCCATTAAACATATTACTCATAATAGAGATCATTTTCATGACTCTGCATCAAGAACTGTAACCCTATGGTGCTCTTAAGTCCACTGAAGCTCATCTGATCCCCAGTTCTCACAGCATCCCTGTTTACTATGCTCTCCCTTGCTATGAATAGCCAAAGTGCCAGCATCTCTTTAAGGACAGTGCCATATATATATATATATTATAGTATAGTAGTGCCAAATATATATATTTGTAGTATAATAAATCTAACTTTCCCTCTAATTATGCTGTTAACTTCTTGTGTAAAATACATAGATTCATAAAGACAAGTAGATTGCAGCACAATTGCCATTATTTTTAGCAGAATTTCACACAGGGATAAACATACATCTGTATTAATGTAATCCTTAGCAAGTTGTTTGAATATCTACCATAATGTTTAAATAACTATGCACAAGAACAATATCTTCCTTTCTGTTGTAACTACAATTCAAAGAATCCGTGACTCTTACACAGCAGTGCTGGTGACAATATCACACTTCCGTATTTGTTATCTGCATTTGAAACAGAGGGTGGGGTTCAGCCTTACTTGGAAGGGAGAGACTGTAGAGGCCAGTTTTTCTCCTTCCCTTCCTCGGAGTTTATGGATAGATCAGTTGTATGCGTGGCTCTCAAATCAAGGGATCTGTGTGTTAAGACTTGAGACATTTCTCTAGAAATAAGCATGTTTTCCTTTTAGACTGAGTGCCAGATAGCATGTTTGAGTGATTTTTTTAAAAAAAGAGATGATTGGCTGTGTCTTCTTTATATTTTCTGAACCAGTTAGTACTGTATTCAATTAATCCTCATTTTCACTATGTTGACTTGGCTACAAATACGTGGACACACACATATACATGTGTGCACATGCACACACATACACACACATACATATACACACATACATACATACAACCAAGAAATATAGAAATGGGTGTAGAACAAAATACTTCTCTGCTGTTAAATGTTTGGGATTTATTTTCATAAATTGTATATTTGTGTTATAATTTGAATTTATAAAACAATGAAAGGCAAGAGCATCCACGTATTAAAGGTACAAATGTTTAAAACAACATATTTTTCTGAGGAGAGCCTTGGTTGATACAGGAGGATGGCTGAGATCATAGAAACCAAGTCTGTGGTAGCTTGGGTGATAGGGGAGCTTCAGTCAACACAGATCATTGCTTCTTCATCTCCATCTCCCTCCCCTGCTCTCCCTCCACTTCTTGCTTCCTTTCTCCCTCCCTCTTTCTCCCCTACTTATTGTATTTCCTCTCTTTAATGCTACTTCCTGATTGCTTCATAG
Seq C2 exon
GTGAGACCCAAAATATTCTACAAAAGGCAACTATTCCCTTGGTACCAAATGAAGAATGCCAGAAAAAATATAGAGATTATGTTATAACCAAGCAGATGATCTGTGCTGGCTACAAAGAAGGTGGAATAGATGCTTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118:ENSRNOT00000019237:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAAACCAATATGCCTGCCT
R:
ACAAGCATCTATTCCACCTTCT
Band lengths:
230-1737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]