BtaINT0082803 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15331545-15333318:+
Coord C1 exon
chr27:15331545-15331704
Coord A exon
chr27:15331705-15333208
Coord C2 exon
chr27:15333209-15333318
Length
1504 bp
Sequences
Splice sites
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
3' ss Seq
CCTCTGTTTTTCACATTCAGGAA
3' ss Score
10.96
Exon sequences
Seq C1 exon
CTTGCCACCGAAGCATTTATAAAGGAATCGATATGAGAGGAGTCAATTTCAATGCATCTAAGGTGAGAAGTGCCAAAGAATGCCAAGAAAGGTGCACCAACAACATTCACTGCCAGTTCTTCACATATGCCACGAAAACCTTCTTCAGTGCAGAGTACCG
Seq A exon
GTGGGTAACATTCAGTGTCTGTTCTTTCTGATGGTGTTTTCAGAAGCATAACCTTTTTTCCTTCATAACCATTTCTTCTCCCAACTGAAAATCAGAGAGAGTTTTTAGGTTTAATCAGTTTTCTTAGTCTTAGAGAGAATAAGAATATTTTTAAAGAGATGGAAATACCAGACCACCTGACCTACCTCCTGAGAAACCTGCATGCAGGTCAAGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTACATCAAGGCTGTATACTGTCACCCTGCTTATTTAACTTATATGCAGAGTACATCAGGCAAAATGCCAGGCTGGATGAATCACAAGCTGGAATTAAGATTGCCAGCAGAAATAGCAACAACTTCAGATATGCAGATGGTACCGCTTTAATGGCAGAAAGTGAAGCGGAACTAAACAGCCTCTTGATGAAGGTGAAAGAGAAGAGTGAAAAAGCTGGGTTAAAACTCAACATTCAAAAAACAGATCATGGTATCTGGTCCTATCACTTCATGGCAAATAGATGGGGAAAATGTGGAAACAGTGTCAGATTTCACTTTCTTGGGCTCCAAAATCAATGTGGACAGTGACTACAGCCATGAAATTAAAAGACACTTGATCCTTGGAAGAATAGCTATGTCAAACATAGACAGTGTTTTAAAAAGCAGGCATCACTTTGAGGACAAAGGTCCATATAGTCAAACCTATGGTTTTTGCAGTAGTCATGTATGGATGTGGGAGTCGGACCATAAAGAAGGCTGAGCACCAAAGAATTGACACTTTTGAACTGAGGTGCTGGAGAAGACTCTTGAGAGTCACGTGGACTGCAAGGAGATCAAACCATTCAATCCTAGAGGAAATCAACCCTGAATATTCATTGGAAGGACTGATGCTGAAGCCAAAGCTCCAATATTTTGGCCATCTGATTTAAAGAGCTGACTCACTGGAAAAGCCCCTGATGCTGGGAGAAAGTGCGGGCAAGAGGAGAAGGGGGCAACAGAGGATAAGATGGTTGGATGGTACCACTGACTCAATGGACATGAGTCTGAGCAAACTCAGAGAGATAGTGATGGACAGAGAAGCCTGGCATGCTGCAGTTCATGGGGTCGCAGAGTTGGACATGACTTAGACACTGAACAACAGTCTTATTATTTTATTCAATTTTGGCATCATTTTTCCTGAAGAGAAAAATTTCCATTTGGTCCGCAAATACCCTGTGCTTGTGGAGTGAGATTTCAGTAGAATAATGTCCTATAGAAGAATAGTTCCTACTGCACCCTCACCCTAACCCTCCCTCTATAGAGGGGGACATGTCTGTTTGATGAATAACACAATTTCTAACTCGCTCATCACGGAGGTCACTGTTCTGATTGCTTTGTTTATTTTCCACTGACCATGGATCATTTTCAACAGGGAATGGACTTCTGCAGTCACCTTGAATTTAGGAAGCAAAGTAACCTCTGTTTTTCACATTCAG
Seq C2 exon
GAACACCTGCCTATTAAAACGGAGCCCACAGGGGACACCCACGCGTATAAAGGTGCTGAGTGATGTGGAGTCTGGATTCTCACTGAAGGCCTGTGGAAACTCGAAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501:ENSBTAT00000012503:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCACCGAAGCATTTATAAAGG
R:
CAATTTTCGAGTTTCCACAGGCC
Band lengths:
270-1774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]