MmuINT0088127 @ mm9
Intron Retention
Gene
ENSMUSG00000031640 | Klkb1
Description
kallikrein B, plasma 1 [Source:MGI Symbol;Acc:MGI:102849]
Coordinates
chr8:46368081-46368724:-
Coord C1 exon
chr8:46368565-46368724
Coord A exon
chr8:46368191-46368564
Coord C2 exon
chr8:46368081-46368190
Length
374 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ACATCTTTTGTGACATCCAGGAA
3' ss Score
6.97
Exon sequences
Seq C1 exon
CTTGCCACCGAGACATATACAAAGGACTTGATATGAGAGGGTCCAACTTTAATATCTCTAAGACCGACAATATTGAAGAATGCCAGAAACTGTGCACAAATAATTTTCACTGCCAATTTTTCACATATGCTACAAGTGCATTTTACAGACCAGAGTACCG
Seq A exon
GTGAGTGAGGCACAGATCCGAGAGGACACTCCAGGGATGTGTTAGCATGAAAAAAAAAATCTTCCCTCCAGTCAAGGTGCAAGGGGCATGCAATCCCCAGCCCTGCCCCTATTTTATTCCTTATTTACATAGTTAATTTCAATGTAATTTCCTCCTAAAGGTAGCAAACTCCCTGTAGTCAACTGATAGGCTGTGTATGGGCATAGTGTCAGACAATGGTGTCTGCCACTCCATTCGCAGAAGGGAAAAGCATCTGTTGATTGATGTTGCCCAACTGTGCCCCTCTGTGGTTATCAATTCGATAACGAATATTATCCGCACGTCTTTGTGCGCCCCAACAAAGGAAGCATAACAACATCTTTTGTGACATCCAG
Seq C2 exon
GAAGAAGTGCCTGCTGAAGCACAGTGCAAGCGGAACACCCACCAGCATAAAGTCAGCGGACAACCTGGTGTCTGGATTCTCACTGAAGTCCTGTGCGCTTTCGGAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031640-Klkb1:NM_008455:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCACCGAGACATATACA
R:
CTATCTCCGAAAGCGCACAGG
Band lengths:
270-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: