RnoINT0080224 @ rn6
Intron Retention
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50164039-50164699:+
Coord C1 exon
chr16:50164039-50164198
Coord A exon
chr16:50164199-50164589
Coord C2 exon
chr16:50164590-50164699
Length
391 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CATCTTTTGTTGACACTCAGGAA
3' ss Score
5.8
Exon sequences
Seq C1 exon
CTTGCCACCAAGACATATACGAAGGACTGGATATGAGAGGGTCCAACTTTAATATATCTAAGACCGACAGTATTGAAGAATGCCAGAAACTGTGCACAAATAATATTCACTGCCAATTTTTCACATATGCTACAAAAGCATTTCACAGACCAGAGTACAG
Seq A exon
GTGAGTGAGTCATGGTTCCCTGAGAGGACATTCCAGGATGCATCAGCATCCGCAGTGAAAAAGACAAGTCTGCTTCCCTCCAGTCAAAGACAAGGGGTGGGCAGTCCTGAGCCCCTTCCTTCCTTAAATTTCTTAGTTACATACTTAATTTCAGTGGAATTTCCTCCCAGAGATAGTGAACTTCGTTTAGTGACTGGTAAGCTATGTATGGGCATAATGTCAGACAATGATGTCCGCCACTCCATTTGCAGCCGCCTGTCCCCTTTGCAGAAGGGAAAAGTGTCTATTGATCACTAATGGCCCAACTGTGCCCCTTTGTGGTAACAAATATTATCTGCACACCTTTGCACACCTCAAGGAAGGAAGCATAACATCTTTTGTTGACACTCAG
Seq C2 exon
GAAGAGTTGCCTGCTGAAGCGCAGTTCAAGTGGAACGCCCACCAGTATAAAGCCAGTGGACAACCTGGTGTCTGGATTCTCACTGAAGTCCTGTGCTCTCTCAGAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118:ENSRNOT00000019237:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACCAAGACATATACGAAGG
R:
CGATCTCTGAGAGAGCACAGGA
Band lengths:
268-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]