BtaINT0082807 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15340363-15340738:+
Coord C1 exon
chr27:15340363-15340531
Coord A exon
chr27:15340532-15340625
Coord C2 exon
chr27:15340626-15340738
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAAGTTAGT
5' ss Score
2.87
3' ss Seq
ATGCTGATCATCTTGTCTAGGTG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GCACAGAGCCCTGCCACTCCAAAATTTACCCGCAAGTTGCTTTCGAAGGAGAAGAGCTGCATGTGACCTTCGTGAAAGGAGTGGATGGTTGCCAAGAGACCTGTACAAAGATGATTCGCTGTCAGTTTTTTACTTATTCTTTATTCCCAGAAGACTGTAGAGGAGAGAA
Seq A exon
GTTAGTGAATGCTTATTTTTCAAAAACAGTTGGCAGATAACTTCCTGGGCTTTCATCCTCTGAGGTTTAATCTCATGCTGATCATCTTGTCTAG
Seq C2 exon
GTGTAAATGTTCCTTACGCTTGTCTTTGGATGGCTCCCCAACTAACATTACTTATGGGACGCAAGCAAGCTCTGGTTATTCCTTGAGGTTGTGTAAACGTGGGGACAGCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501:ENSBTAT00000012503:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=91.2)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGGATGGTTGCCAAGAG
R:
TAACCAGAGCTTGCTTGCGTC
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]