RnoINT0080228 @ rn6
Intron Retention
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50168210-50168581:+
Coord C1 exon
chr16:50168210-50168372
Coord A exon
chr16:50168373-50168468
Coord C2 exon
chr16:50168469-50168581
Length
96 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TACTGTTCATTTTTTTCCAGGTG
3' ss Score
9.96
Exon sequences
Seq C1 exon
AACCCTGCCATTTCAAGATTTACTCTGGAGTTGCCTTCGAAGGGGAAGAACTGAACGCGACCTTCGTGCAGGGAGCAGATGCGTGCCAAGAGACTTGTACAAAGACCATCCGCTGTCAGTTTTTTACTTACTCATTGCTTCCCCAAGACTGCAAGGCAGAGGG
Seq A exon
GTAAGGGAACCTTTCTTTAACGATAATCAGCAAGGTAATTTTTTTCTAGTTTTCTCTCTCTGTGGGTTTAATTTTGTACTGTTCATTTTTTTCCAG
Seq C2 exon
GTGTAAATGTTCCTTAAGGTTATCCACGGATGGCTCTCCAACTAGGATCACCTATGAGGCACAGGGGAGCTCTGGTTATTCTCTGAGACTGTGTAAAGTTGTGGAGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118:ENSRNOT00000019237:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=94.5)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCGAAGGGGAAGAACTG
R:
TCCTAGTTGGAGAGCCATCCG
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]