GgaINT0068414 @ galGal3
Intron Retention
Gene
ENSGALG00000013571 | F1NUN5_CHICK
Description
NA
Coordinates
chr4:63223920-63224278:+
Coord C1 exon
chr4:63223920-63224079
Coord A exon
chr4:63224080-63224162
Coord C2 exon
chr4:63224163-63224278
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTGCATTTATTTATTGTCAGAAA
3' ss Score
4.46
Exon sequences
Seq C1 exon
CCTGCAATTCTCGCACTTACGTGCATATGAATTTTCTGGGAGATGAACTCAATGTCACTTATACTAAAGGACACAGAGCTTGTCAGCAGGTTTGCACAGACATGATCCGCTGCCAATTTTTTACCTACTTTCCCCTCCAAGAGGCATGCAATGAGGAAAG
Seq A exon
GTGAGATTTCTTAGGGAAGGCATCTAATGTATGCGCTCTCTATAAGAAGTATAAACTGGATCTTTGCATTTATTTATTGTCAG
Seq C2 exon
AAAGTGTGAGTGTCATCTAAGAATGTCCTCAAATGGATCTCCAGTGGAAATACAACACGGTCCAGGAAGGATCTCTGGATACTCACTAAGACTATGTAAAAAAAAGGCCAGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571:ENSGALT00000037595:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.2=96.3)
A:
NA
C2:
PF0002421=PAN_1=PD(37.6=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAAGGACACAGAGCTTGTCA
R:
TCCTTCCTGGACCGTGTTGTA
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]