RnoINT0057460 @ rn6
Intron Retention
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50195428-50197509:+
Coord C1 exon
chr16:50195428-50195590
Coord A exon
chr16:50195591-50197303
Coord C2 exon
chr16:50197304-50197509
Length
1713 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
3' ss Seq
GTGCACTCTCTCTGTTGTAGTAT
3' ss Score
7.99
Exon sequences
Seq C1 exon
TATTCTGTCATCCGAACTTTTACAACGACACTGATTTCTTGGGAGAAGAACTGGACATCGTCGATGTGAAAGGCAAAGAATCCTGCCAGAAAATGTGCTCTGACAACGTCCGCTGCCAGTTCTTTACCTATTATCCCTCTCGAGGATCTTGCAGTGAGAGGAA
Seq A exon
GTAAGGCAAGCAAGCGTTAGGTGGATGCTCCTGGAGCACCTCCTTGCGGAATGCGTTTTGCTTACACAGTTTTGTTTTCAACCGCAGGGGCAGATGTTACTTAAAGCTTTCTTCAAACGGATCTCCAACTAGAATACTTCATGGGAGGGGAGGCATCTCTGGATACACGCTGAGGCTGTGCAAAATGGATAATGGCGAGTACTTGAAAATAATACAGCTGAAGGGAAATGGTCAGCGTCATGTCCACACAAGGCTAGTCTACCACAACCATAGAGGGGTGGAGACAGCAGCACAAGCCTATATACAGGAGGCTGAGACAGGAGAATCAGAAGTTTAATGCCAGGTTGGATTAAAGAGCAAAATGACAACAAAATAGACATGGGAGAGAAGTGGTTTGTAAGTTATCAAATTAAGAGGTTTTTCCATAATATGTATATATATATGTGTGTGTGTGTGCATATATTAGTCATTTCAAGAGGCATTTCCAGATGAGACAGACCCAGAGGGACGATTTTTGTTTTCAAGATCAATAGTTTTTTGTTTTAATTCTCAGAGATTAAACTACCAATCAGTCCATTAAATTTTTCATTTTCTTCCCACTGGATCTTTTAGTGAAACATGATCTATATCTATATCTATATCTATATCTATATCTACATCTACATCTACATCTACATCTACATCTACATCTATATCATAATGTCCAGTGTTAAGTTATCCTGTGAATTGTGATGATGTAGCTGAGATTTAATGAACAAAGTGTGACACTAATTACTTCTTGTGAAAGTTTTAAAAGTACAAAACCTTTTGTGTCACATTGTTGGGCTATTGGGAGTTAAGGTGACTCCACCCTTAACTTCTGAGGACCTGATTCAAATATTTGGTCCCAACAATTGTGATGTCCATCCAGAAAACACGCCTTCTTAGAATTCAGAGGTTTGATGGACTCTCTGGGTGACCTGTGCCTCTCAAGAAAGTTAATTAATTTGTAGCTCATATATTCTGTGTTTTGCTAATGATAAATTTACCCGACAAGAAGGGACATTCAAAACAAGTATTGTCTTAATTCTACTTCTAAGAGGGCAATGAGAAAAGACTGTTCAGTGATGTGAGTGTGCTCTAAAAACTGGGATCTAGAAGAGGCACCTTGATAAATCGAAGATTACATTTCTTACCTCTTCTGCCTCCATTGTGTTTGTCTCTTTGAATTTATAGTCTTTGGCCTGTACAGGTGACAGAACGGGTTGGTTGTGGATTGATAGAGGAGAAAATATGGAGGGTAATAAAACTGTATGCCTTCTGATGCCTAAATTAGAGAAGTAGGTTACACTGTGCAGCATCAGGCTACACAATACCCTTAGGTAAGAGGGAGCATCTAACAGAGGTGTTTGTCATATTTACTGTTGTTGGTCTCTGATGTAACTTGACTTTCTAAAGACACCTTGTAACGCCACTAGAAGTGTTTCTTCATCCCAATTGCAATGTTGAGCTCTGTAAGTTCTCAGCATTCTGTATAAGCTAGTGGGACAGACATCAAGAGGCTTACACTGGGGTTACTGAGAATGTGTCCTAGTTACTGCTCTCCCTTTAACTTTCTAAACATTACCTTCTTGCTTATAGGTTGATAGTCTTCCGAGGGATTTCTCCCATTACAGAATGGCCGGGACAGTGAAGCCCTAACTGCTAACCTACTGTGCACTCTCTCTGTTGTAG
Seq C2 exon
TATGCACAACCAAAATCAGGCCCAGGGTGTTCGGAGGAGCTGCGTCTGTTCACGGCGAGTGGCCATGGCAGGTGACCCTGCACACCACCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCGGTGGATATTGACAGCGGCTCATTGTTTCTCTGGGTTAGTATTAACGATATTCGCCTGGGGTCGTCATCACCAAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684:ENSRNOT00000041946:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(71.2=94.5)
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=81.5)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACGACACTGATTTCTTGGGA
R:
TACTTGGTGATGACGACCCCA
Band lengths:
345-2058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]