BtaINT0058854 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003572 | F11
Description
Bos taurus coagulation factor XI (F11), mRNA. [Source:RefSeq mRNA;Acc:NM_001008665]
Coordinates
chr27:15362611-15365873:+
Coord C1 exon
chr27:15362611-15362717
Coord A exon
chr27:15362718-15365704
Coord C2 exon
chr27:15365705-15365873
Length
2987 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTGCAATCCTTCTGTCGTAGTGT
3' ss Score
4.91
Exon sequences
Seq C1 exon
GGGTAAATGCTACTTAAAACTTTCTGCAAATGGATCTCCAACTAAAATACTTCATGGGACAGGAAGCATCTCTGGATACACGTTAAGGTTATGTAAAATGGATAATG
Seq A exon
GTGAGTTTAACGTCACTTGAGAAAAGTAATAGCCTGAAGGAGTTATTTTATACTGAGTATGTCGTGACTAAGAGAATCAGTAATAGCCACAGAGGGGAGAAAATTAGTACAACAATGAATGCAGTTGCAATTTTCTGTTATTTTCACTGCTGTCAATCAGGCTGACCTGTTTTAAAGGTAAATATTGGGCTTTAACTAAACTCTGCATTGCCTGGCATTAATTAAATATATGTTATAATCCCTGAGTCAAGAAGATCCCCTGGAGAAGGGAATGGATTCTCACCTGGAGAATCCCATAGACAGAGGAGCCTGGTGGGCTATAGTCCATGGGTTTGCTAAGAGTCAGACACCACTGAGCAGCTAACATTTTTTGCTTAAACATTTTATAATTTGATACATTTATATAACTAGTATTGCCTGCTGAGGCTCAGGTTTAGTCAACATTTTTATGTCTGTTTGTTGATATCACGGTCAAATGATCTTTCTTATTATCCTTTATAATAGAAATATCAACCAGCATCTTAATTAGTCATCTTCTTTCTACTGGTTGTTACTTGATCTTTAATTGAAATATAAATAATCATCTTATGTTGGGAAAATTATGTTATATATACAAGAAATATTCAGTAACTCCTTCTCCAGGGCCTTCAGATTTCCTGCGAGTGTTTGGAGTATTTATGAATATTAGCAAAAGTTACAGTAAAACCTTATTAACTTGTAACAATGAGTATGAGAGAGTGGAAATAAAAAGATTATCTATATTAAGCACGACCTATAATAATATAAAAATGATAATACCATATCAGCAGTACTTCCATTCCAGTGGCCAATTTCTGAGCCTAGTAACAAAAGATGGTTTGTAGCCAAACAACAGTAAGGGAAAGAATAGGAACATTCTCCCTACACGCATTCCTCCCTAAATTATCGTAATAACCTACGACGACATTAGTGTTCATTGATTTACATACACTGCATGTTTCTAGACTTTTATTGCTTACTGCCCAATATTACAATGCAATATAAATTAAGTTGCAGCTGAGATTTAATGAGTGAAATGGAAGTGATAATTATGCTTTGTAGTAGATTTCAAAGTATGAAAATCTGTCAGAAATACTGGCTCTACTGAGAGATGAAGAAATAAATCCTGAGGTTCTGAGAACTTGTTTTGTAGAACACACAAAGTTACATTGTGTCCAATATTACCCTCCTAGCTGGGAAATTCTGCCTAGAAAATCCCATGGACAGAGGAGCCTAGTAGGCTGCAGTCCATGGGGTTGCTAGAGTCCTACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGCGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGATGGGACTCTGGATGGTTCTAGCTTCTTTACAAAGACAGTCAGTTGAGTTGTATCTCATACCTTCTCTGTTTTTCTTGCAATAAATTTACCTAAGACAAAAAGGAGTATTTATGATCTTTCTGTTGTGCTGGTGCTACCAAACAATAGAAAGGATGCAGCCGATTTTATTGTCAGCAATGGTGACATCATTTTAAAAGGGGAGCCACCATTTACACCTTAAATTGCAGAATCCATTCTCTACCCTCCTTCCTTTCTAATGCTTCTTATGTTTCTAATGTTCCTCCTTATGTTCCTTTCTAATGAATCTATGGACTCTGGTCTCTAAAGGTTGCAGATTATATCAGGTGTAGACTGACAGCTAAACGGAAACTATAAGATAAAGGAAACTAAAATCTTTTGTCTTTAATGTACCTTCTGATAGAAGTGAAATGAGTTGATTAGGTTTTGCTGCATTAGATTAAAAATGTGCTAATATGCAAGGGAACATCTGACTGAGATGTTTATACCTTTCACTGTCATTGGTTTATACTATAACTTAACTTTCTGAAGACACAGAGCAATTGCCATCCAAAGAAACATCTATTAGTTCAAAATGCAAGGCCAAGCATGGGTATTTTCAGCACTTTGTTTGAACTGAGAAACGAACACCGAGATCTAGAACTCATCTTAACAAGGTCTTTATTTACATGTTCTTAATGTATTTTAGTTACTGCTGACATATTAATTTTCCAAGTCAAGAAAGAACTGAGGGGTGAGTTTGAATCAAAGTCCTCGGAAATATCAAGGGTTGAGCATAAAACCCCAATCTGTCAACAAGACCAAAGGGCAGAAGCAGTTCACAAACAGAAGAGAGGCTGGGTTGGGGTGTGGGTGGAGCTGGAGTGACCGAGCGGGCCAAAGGGCAGCTGGGGTGGGAGGGCAGTGGGAGGAACTGGACAAAGGCTGCAAATGGAGTTCAAGGTGTTCACCTCTAACCAGAGTTCTCAAACGTCAGTGAGGCTGATCAAAACTTAGGTGGTCAGGGTCCACTGTTAGAGTTTCTGATTCACGACGTCTAAGGTGGGGCCCATGAATGATCATCTCTCACAAATTCCCAGGTCATGCCTGGGAGGTCCGTCTGGGGGCCACACTTGACAACCATTGCTTTAAAAGAACCGCTGCGGTTGTCATTTGAGGGAAGGTAAGCCTCGAAGTCCCAGATGAGACATTATTTTATTGTTGTTGTTCAATGGCTCGGTCATGTCCAACTGTTTGCGACCCCATGGACTACAGCATGCCAGGCTGCCCTGTCCTTCTCTATTATTTGGGGCATTATTTGGGAATGTGCAATTACAAGGTGACCCACTCATTCAGGTTTTATGTTCATATTATGCTTTGCCAACTTGAGTCTAAAGTATCTTCAAGTGAAGGTCACGGTACATTATTGAACCCAGGGCAGGGCGTTCTTCCCTGTGTGCCTGAAGGAATGTAACTACTGATGGAAAATGAAGATTTAGGAAGCTACTCACTGCAATCCTTCTGTCGTAG
Seq C2 exon
TGTGTACAACCAAAATCAAGACCAGAATTGTAGGAGGAACCCAGTCTGTTCACGGAGAGTGGCCGTGGCAGATAACTCTGCACGTGACATCACCCACCCAGAGACACCTGTGTGGAGGCGCCATCATCGGAAACCAGTGGATATTAACAGCTGCTCACTGTTTCAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003572:ENSBTAT00000004648:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=83.8)
A:
NA
C2:
PF0008921=Trypsin=PU(20.3=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]