MmuINT1009857 @ mm10
Intron Retention
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:45246747-45248666:-
Coord C1 exon
chr8:45248554-45248666
Coord A exon
chr8:45246907-45248553
Coord C2 exon
chr8:45246747-45246906
Length
1647 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAAT
5' ss Score
3.54
3' ss Seq
CCACACTCTCTCTGTTGTAGTGT
3' ss Score
8.24
Exon sequences
Seq C1 exon
CCGCAGGGGCAGATGTTACCTAAAGCTTTCCTCCAATGGATCTCCAACGAGAATACTTCATGGGAGGGGAGGCATCTCTGGATACTCACTGAGGCTGTGCAAAATGGATAATG
Seq A exon
GTGAATACTTGAAAAAATACAACTGAAGGGGAATAGTCAACCTAACGTTGCTAGTCTACTACACGAGGCTAGTCTACAACAACCATAGAGAGATGGAGACAGCAGCACAAGGAGGTTGAGGCAGGAGAATCAGAAATTTAATACCAGATTGGATTAAAAGGCAAAATCCTGTATAAAAAATGACAACAAAATAGACATGGAAGAGAGAACAAAGTTAACAAATTTGGAGGTTTTCCCTTACATATATGTATGTCATATATATATATATACTTATATATATATGTATATGTGTATGAATATGTATATGTATATATGTCATTTCAAGTGGCATTTCCTGTAGAGACAGACCCAGAGGGCCAATTTTTGTTTTCAAGAAGTGTTTTTTTTAATTATCAGAGATTAAACTATTAAACAGTCCATTAAATAAATTATTCATTTTCTTCCCACTTAATATTTCAGTGAGCCATGATTAGATGCTATGATATATGATATGATATATACACACACACATATATATAATATCTCTCATATATATATATATATATATATATATATATATATATATATATATATACATACACATACATACACACATGCATATATATAATTCCAGATGTTAAGCTATCCTGTAAATTGTGATGAGATTTCATCAATAAAGTGTGACCCTAATTACTCCTCGTGAAAGTTTCAAAAGTATAAAACCTTTTTCATCAGATCATTTGCTATTCTAGAAGGTGACTCTATCCTTAGTTTCAGAGGACCTGATTTACAGCACATTGAGATGTTTTATCCCAACAACTGCAGTGCCCTAAACAGAAAACATGCCTTCCTAGAATTCACTGGTTTGATAGCAATCTCTGGGTGGCCTGAGCCTCTTAAGACAGTTAATTAAGTTATAGTTCATACACACTGTGTTTTGCTCATGATAAACTTACCTAATAAGAAGGAACATTCAAGACAAGTATTGTCTTAATTCTACTTCTTCATGGTAGAAGGGGCAACTAGAAAGACGGCTAAGTCATGTGAGCATGCTTTAAAAACTGGGATCCAGAACAGATAGCTTGATACACTGAAGATTACATTTCTCACCCACTTCTGCCTTCATTATGTTTGTCTCTGTTGAATTTATAGCCTGGTCTGTACAGGTGACAGAATGGATCAGTTGTAGATTGACAGAAGAGAAAATGTGGAGGGTAATAAACCTGTCTGCCTTCTCATGCATAGAGAAGTGGTTACACTGTACAATATTGGGCTACAATACTTACCTTTATGCAAGAGAGAAGATCGAACTCAGTTGTTTTTCGTATTTACTCTGTTGTTGGTCTCTAATGTAACTTGACTTCCTAAAGACACCTAGCAATGGACACCACTAAAAGAAGTATTTCTTCATCCCCAATGCAAAGTTGAGCACTATAAGTTTTCAGCATTCTGTTCAAGTTGATGGAGCAGACATCGAGATAGAACTTTTTCTGAAGGCTTGCATTGGGCTTACTGATAATGTGTCCTACTTACTGCTTGCCTGTTAACTTTCTAAAGGTTACCTTTCTGCTGATGGACTGAAAGGTTTCTGAGGGATTTCTCAGAAGCCTTTCAGGACGAGGGACATTGAAGCCTAGGTAACTGCTAACCACACTCTCTCTGTTGTAG
Seq C2 exon
TGTGCACAACTAAAATCAACCCCAGAGTGGTAGGAGGAGCTGCGTCTGTTCACGGTGAGTGGCCATGGCAGGTGACTCTGCACATCAGCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCAATGGATACTGACAGCAGCTCATTGTTTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645:ENSMUST00000034064:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(38.4=84.6)
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=81.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGGGCAGATGTTACCTA
R:
CCAGAGAAACAATGAGCTGCTG
Band lengths:
272-1919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types