BtaINT0058866 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003572 | F11
Description
Bos taurus coagulation factor XI (F11), mRNA. [Source:RefSeq mRNA;Acc:NM_001008665]
Coordinates
chr27:15362359-15362717:+
Coord C1 exon
chr27:15362359-15362521
Coord A exon
chr27:15362522-15362610
Coord C2 exon
chr27:15362611-15362717
Length
89 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
ATTTTGCTTCCAACCTGCAGGGG
3' ss Score
8.42
Exon sequences
Seq C1 exon
TGTTCTGCCATTCTTCATTCTATCGCAACACTGATTTCTTGGGAGAAGAACTGGACATCGTAGACGCGGACAGCCACGAAGCCTGCCAGAAAACATGTACCAACAGCATCCGCTGCCAGTTCTTTACCTATTCTCCATCTCAAGAATCGTGCAACGGAGGGAA
Seq A exon
GTAAGACATATGTCAAGTCCCATAGACGCTCCTGTCCCAGCTTGTTGAGAGATGAGTTATGTTTATACCATTTTGCTTCCAACCTGCAG
Seq C2 exon
GGGTAAATGCTACTTAAAACTTTCTGCAAATGGATCTCCAACTAAAATACTTCATGGGACAGGAAGCATCTCTGGATACACGTTAAGGTTATGTAAAATGGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003572:ENSBTAT00000004648:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=94.5)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGCCTGCCAGAAAACAT
R:
ACGTGTATCCAGAGATGCTTCC
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]