BtaINT0082842 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012029 | KLRB1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:6373]
Coordinates
chr5:100949064-100954118:+
Coord C1 exon
chr5:100949064-100949148
Coord A exon
chr5:100949149-100954019
Coord C2 exon
chr5:100954020-100954118
Length
4871 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
ATGTTTTCTTAATGTCTCAGATC
3' ss Score
9.08
Exon sequences
Seq C1 exon
ATGGAGAGTCAGCTGGTATATGCTGATTTAAACTTACCCAGGGATTCTGGCATTGAAAGGTCATCACCCCCATCTCTTCTTCAGA
Seq A exon
GTAAGTGGCTTTAATTTTCCTTTTGGCATTTGTATATCTTCCAATAGTTAGATGTTCCTGTAAATTTGTGGCTTTAAATCATAACTTTGAAGATGAGCAGTTGTCATGTTTTAAGTTGATATAGCATGGCCTGTCTGTAGGTAATCACAGGTGTGGAAAAAAGTACATACCTTTAGATTTCTTTTTGAATATCATTCCTGTTATTGAACCTTGGCTAAAAGAACCTGAATAAATATTTTATAAGTATGAACAAAGGAGTATTTTTTATTTTATTTGGAAATAAAAGGAGTTTTTCTATTTTTTTTTTGTTTGTTTTATTTTTTGCCATCCCATGTGGGGAGCAGGATCTTTGTTCCCCAACCAAGGATGAAACCCGTGCTCCCTGCAGTGGAAGCACGGAGTCTTAACCACTGGACCAGCCAGGAAGTCCCTTTTTTGTTTTTATTTTTTAACAAAGAAATGTTTTTAGAAATATTTTGCTACCTTGTTGTAATAGTAACCTACTTTATTTCAAATCTCTCTGTAAAATACTGCGATTAAGTTCCAGTGCATTTGCACCCATGACATTCCTTTCAGAATACAAAGTGTTAATGATTAACACTTTGCTAATTAATTAACACAAAGTGTTAAAGATGTTAATGATGAACATCTTCCACTTTTCAAAGGGAAGAAAAAATGTTCCAAAAGAAAGTTATATTCAAGATCAAAGATGTGAATATACTCACAATCTGATGATTTTTAAATTGAAAAATGTATCAGTTTAGAAGGAGATAGGCCACAAGACACAGGAGAATGTCACTGATAAACCTATTTGATATTTGTTGAATTTGGTAATTTTCTGTGTGTCAGAGGAGCTAGTATTCTGAGTGAAGGAGATGAGGATTCTAACGTGAGGTAACAGGTGATGGATTCCATGGCTGAAAAGAAACTAGAAACTAAGTAGAAAAATGTATAAAATTATTATAATATAGTACTGCCTTCTGATGTCAAACCAAATTTACTAATATTGCAATTTTTATCCCACCTGATATTCATTCCTTTGTGTGCTTAGCAGGTGTGCTACATCCTTTCAGGATGACTTGGGATAATTTCAAACTATTCAGTTATCAACATTCTAAATTGGAGACTGAAAAGTCTTAGGGTTATCAAATAGTTTCACAATACCCTTCAAATGGCAGTTATGGAAAATTGGAGAATTTTGATAACTATAGTGACAGTTTGGTCAAACTATAGTTATTTTTTTATGGGAAACAGAAAAGCATTCCGTTCCCTATTCAAATCTAGCAAAAGTGGCGAGAAAGGAGGATGGTGTTGAAAGGAGATGTGGGAGGATGAATATAGAAAAAGCAAGATTTTCCTCAAAAGCTATGATCTAAGATCCCAAATCAATGGGGTCAGAAGATGTGTCTATTCTGCTTGTAATCATTATTCCTCAAAATATCATTATAAAAGTAAATCTGAAAAACAAAGCAGAATAAAGTCAGAACAAAATATGTGGTTACAAAACACTTGACTGCAAAAAAATGTATAACCTACAAGTTGAGAATTTTGTATTTGGTGGTTTTACCAAGGACCATAGCTGGGAAGGCAGCCTCTTAGATAACTCCGAGGAACTGTCCCCAAATGGTGAGGGAGAAACCAGGACATATAGGAGTTTTTGCTGGAAATAAAAAAATATATAGTTGACTACAAAAAGATGACTGCTAATCACAAAAACAGACATCGAGTTAATGATTTTAGTGTTTACTTATGTGGGAGAAGATGCAAGAGTCTGGGCTTACTCAAATCATTCCCGTGACATGCATTTTAACTATCTACTGCTAGTATCCTGTTTTTCTTCACTCTGAATTCCACTCGGACTTCAACATCACGGCGGCTGCCCTGGCTAATGGGTTTATGGTCACAACATCTCTTGTTTATTGAAATGGCAGCTGACATTCTTTCTCCACAGATTGACCTGTTATTACATTTATTATGAAGCTACCCCTGAGCTCTTTGGCTGAACTGTTCAGGCTGTGGGAACTGTAGAGTAGTGATTACATCAAAGGCATTCAGGTAAACCGGAGATGTGAGTTGTGACCTATTTAGTTTATGGCCCAGCACTTGATTTCTTAAAAAAGTAGATAAGTGTTCACAAAATGCCTCTAGAGTTTACATATTCATCCAAAAATAAGCACCTGTACCAGGCATGCCCTGGTGCTGAGGTTAGGACAAGTGGAAAAAATAGTGGAAAAATATTTTCTCTGTTTGTGTTTATGTTATACTGCTAGGAAGACATACAAATAAACAAATAACTAAGTATATACATATATATGGGTTAGATAATATTAAATGCAATAGAGAAAATTTTATCTATATTTTTTACTCTCTCATATTCACCCCTCTGCTTTTTTTATTCTTTATTTATTTATTTATGGCTGCACTGGAACTTTGCTGCTGCCTGTGAACTTTGTTGAGTTGTGGACTATTCAAGGGCTAGTCGCTAACTGTAGCGCACAGGCTTCTCATTGTGGTGGCTTTTCTTGTTGTAGAGCTCAGACTCGGTACCGGATGTGCACTGCTTAGTTGTTTCACGGCATGTGGAATCTTCCCAGATCAGGGATAGAATCCCTGTCCCCTGCTTTGGCAGGTGGATTCTTAACCACTGGACCACTAGGAAAGTCCTGAGAAACTGTTTTTTATTTGTGCTGGAATTGAGAGTTAACTTCAGAGAGGGTATGATATCAAGTAGAAGAAGGCCTGCTTCACAAAATGACATCTGAGCCAAGACCTGAAAGAATTAAAGGACAAAGATATGTTTCCTTGGAGAAGAGCTTTTTAGAAAATGGACCAGGGCAAGTGCAAGTTCCCTGGGATGAGAACATTCCTGTCCTTTTGTAGGAGGAGCACATACATTGGGTGTGAAATGATGGACCATATCTGTGTTGAAAGCAGCAGGAGATAAAGTCAGAGATGTAATGGGAAATGGATTGAACAGGAATTTGTAGACTGTTTTACAGATGTACAGTCTTAAATCTGCTTGAGAGAAGGCCAAGAAAAGGTTTGCAGCAATGGAGTGAGATGATTTGGCATACTATTTTTTTTTAACTTTATGTATTTATTTATTTATTTTTGGCTGCACTGGGTCTTCGTGGCAGTCCAAGGGTTTCTCATTGTCACAGAGCGTGGGCTCTGGGCTCATGGACTTCATTAGTCGCAGAATGCAGTCTCGGCAATTGGGGCTTGTGGGCTCTAGAGCATGGGCTCAGTAATTGTGGCAGAATCTTCCCAGACCAGGGATTGAATCTGAGTCCCCTACATTAGCAGGGAGATTCTTATCCACAGCACCATCAGGGAAGTCCTTGGCATATTGTTTATATTCAAACAAAAAGTAGCCCTGCGTGGGTATTTCCAGATGACTAAAGGAGGAGAAGGGGAGAACAGGATGAGATGGTTGGATGGCATCACCAACTCAATGGACATGAGTTTGGGTAAACTCCAGGAGTTGGTGATGGACAGGGAGACCTGGCATACTGAGGTTCATGGATTCGCAAAGAGTCAGACACGACTGAGCGACTGAACTGAAGTGAACTAAAAATTTACCTGGCATCTTCAATTTGTTGTAACTTTGTTAGTTCTAAAGTCATGTAGTGTTGCAGAAAAACAACTCAGAAGAGTCATAAGACCCTCCTCTCAATTCCATAAATTTTAAATGAACAGTTATTATGTACCAGAGTCCATGTCTAGAAGAAGTTTTTCATATAACCCTTTCCAAAACCTCACAAAGTAACTATTATTTTATGTTTCACAGGTGAGGAAGTTGTATTTTATGAAGGTTATAGGCTTAAAGTAACATACTCAAATACAAATCTGTTACATTTGAGAGCCTTTGCTCTTAACCACTGCTGTTCTTCAGTAATAAATGATAAGATAGTGACTATATGAAACTTTCTCCATTTTTCAAAATTTCAAGACAGGAAAGAATAAGGAAGAAAAGAGACAGAAAGGTAAAATACCATACAGCTGTCAGGAAAGTTCACCTAGGACTGTCTCAGGCTCACTAAGTTTAGCTACTGTGTCACACAGGATCGCATTAGAAGTTCTAGGTCAATATTCTCCAGTGTGCTTTCTCTCATTTTCAGATTACCCCTAGGACCTTGGAGCTCCTCTAGGTGTTATCTTTTCTCTCTCTCCTCCACATGATTATCCAGGTGTCACTATCTAAAATTTAATCCATTCTGTTTCCTACCTTAATCTTTTATCACATTTAGCTATCTTAAATTCCATCTCCACAAGGATGTTTTAGAAAGGGCTAACTCTTAGACAAATGTCACCGTCCTAATAGGAGAGTTCGGTAGTAGTTGGCTGAAAACTGGGTCACACAACTCAGTCACCTGGGGGAGTGTAAAAAACTAAAGTAGAAATAAATGGACTTACAGGTCACTCTGGAACATTTTTTTAAATCAATTAATTAATTTTATTTATTTTTGGCTATGCTGGATCTTTGTTGCTGCGTGGGCTTTCCCTAGTTGTAGTGAACAACTCTTTAGTTGCTTCTCATTGCAGTGGTTTCTCTTGTTGTGGAGCATAGTCTCTAGGGTGCTTGAGTTTCAATACTTGTGGCCCACGGCTTAGTTACCCTGCCACGTCAGGTGGGGTCTTCCTGGAATAGGGATTGAACCTGTGTCCCCTGCATTAGCAGGAAGATCCTTAACCACTGGACCACCAGGGAAGTCCTTAGGACCCTACTTTAAGATAACTGATAAATGTTCTTTCTTGCCCCTAACCCCCAACCTGAATCTTGCTCTTTCTTATGTGATCCAAACAGCCTTTGCTTTTTGTACCAGATGAACTCAACTGAGTTAACCAAGCATGTTTTCTTAATGTCTCAG
Seq C2 exon
ATCTTTGTCAGGGTCCACGTTGGCATAACTTTCCCCTGAAATTTAGTTGTGCTGTGATTATACTTCTTGCCTTGACTGTGACTGGGTTGAGTGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012029:ENSBTAT00000015955:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]