MmuINT0088250 @ mm9
Intron Retention
Gene
ENSMUSG00000030154 | Klrb1f
Description
killer cell lectin-like receptor subfamily B member 1F [Source:MGI Symbol;Acc:MGI:2442965]
Coordinates
chr6:128995919-129002575:+
Coord C1 exon
chr6:128995919-128996050
Coord A exon
chr6:128996051-129002476
Coord C2 exon
chr6:129002477-129002575
Length
6426 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTATCCTTTGCACTTCTTAGATG
3' ss Score
6.23
Exon sequences
Seq C1 exon
AGAACTTAGAATTTGTCACTGTTCACAGTTCCCATCTCCTGTCTACAATGGACACATCAAAGGTCCATGGCAATGTAAAGCCATTTAGGTGTCCAGGGTATAAGCAAGCATCTTCTCCATCTTTCTCCCCAG
Seq A exon
GTAAGTGGCTTTATTTATTCTTTTGGAATGTGCATATAGCCTAGATATAAGCCTCCCCCATTATTTTAGAGTTGTAAGCAATTGCTTTGGAATAGTGAGATGACTTATTAGGTAAAAGTACTTGCTGCACAAACCTGACAACTGGAGCAAAAGTAGGGGAGATGGCTTGTTGAAATGGAAGTAAGAGCACTGAGAATTCCAACTGCTTTTGCTGGAAAGAGAATCACTTCTTGAAGTTGTTCTCTGATCTCTACACCTACTATAGTATGCAAACATGAGCAGTCACATAGACTCTCTCTCTCGCACACACACACACACACACACACACACACACACACACACACACACTCACACTCCTATATCCCACACCTGCAATTATACAAAATGGACACACACCTACAGTCACAAACACACACTTATACACACATACACACCTGCAGTCACACAGACACACATTTATCACACACCTGCAATCACAGACACACATCTGTACTATCAAACACATACACTCTCTGTCTCTGCCTCCCTCTGTCTCTCTGTTTCTGTTTTTGTCTCTGTCTCTGTCTCCGTCTCTCTCCCTCTTTCTCTCTCCCCTTTTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCCTCTCTCTCCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACTAGCTAGAAACCTGTTGCTTTTAACCAGTGGTTCTTCTGTTGATGTTGATAGTGTAGGACAGCTTGCCTGTAGCTATCTATAGATTCAGAGAGAAAAACTCACATGTTGCTTTTTATTCAAGTAACCTTTATGCACAGGGCTTCTTCTACTCAGCCTTAGTTAAAAACACCCTGAAGAAATAATGTTTTGCAAATATGAGCATGAGAATGTTATTAGAGATACTGCAAACTTGCTGTAATAGGTTGCCCATTCCAGATCGTGGTACACAACAGACTCTCTGGCTCAACTCCACTGCAGTTGCACTTCTAGCATTTAGCATTAGGGAAAAATCAGCCCTCTTTTCTGCCAGTTTAGAAATCTTAGGGAAACAATGTGCAAGACTGAGGTAGTACTCAAAAGTATCTAACAGGACATGAGGATGTATGAAAAGGGACCAGAAACTGAGGTAGAAAATGTGTCAAATTGTCCTGAGATAGCACTGAACTCTGTGACCCAACTGGACTTACTAATATTAATAACACTGCACCATTTCAATTTGTGAAATTCCTATATTGTAAAAACTATGTGATTATCAATATTAAAGATTTTGGTTAGGAACCATCATAAGAGGTAAAATCAGGAAAGCATCTTAGAATCATTATATCAGCTTCATCTTCATGTCAGAGTCAAGAGTAAGTGGAGGCTTTTACAGTGCTAGGATGTTCCCAGTGAGCCAGCGTGATAGAAAGAAGCATGTTTCCTTCTGCTGTGTTCCTGCTTAGCAAAAGTAGGGGAGGGGCTTGTTGAAATGGAAGTAAGAAAGTGCAGGTTGAGAAAGATAATGTGATTTCCTCAGCACTACTATCTCAAATCAAGAGACTAGGAAATTTGTCTACCCTCATTGTAATTATTTTCCTACAGACATCAGCTTGAATGTGAACCTGAAGGACAAAATTAGTACCAGCAAGGCATATGACCCAGTAGTGAAGGAACGGAACCAACCTGCGCCCATTAACTAGGTTCAAACTGTGGGAAATTCATAGCATAAGGATTAGAACTCTCAGTAAACAAACACAGAAAGAGGAACATGAACAGTTACCTACTTTGTGACCAAATAACAGAAAGTTTTCTTTGATGGTAGAATGGATAGAATATATACAGAGCTCATTCATTCATTCATTCATTCATTCATCCATTCATTCATTCAGTTATAACCACCCTGCTATGTGTCAGTGTTTTTCAAAATAATATCCAGGTTTAAACAAATGTGAACATCTTTTCCTTATAGGGTTTCTATGAATGTATATATGTGCAATCATTAAACACCTGCCCCACAAATCCCCCTTTTGTTTTTATAAAAAAGGGGGGGCTCACTGGTGTGCCTGTGTCATTTGTGATGAAAATTTAGGGTGGGGTGGAAGTATCAGAAGAAAACATACAGCCTAGAGAAGTAGCACAACAAAGCCAGAGTAGTAAAGAGGGTTAAGGGTAAGGGTTGGGAAGGCAAGAGATTGTACAATCAATTACTTGTTCCATGGGTAGTACAATTTGAGGGTAATAACACCAATTTTGAACAGCAATTAATTAATTTAGATAGACATTATGTTTTCTTTGCTATCATGTAACTTTCCCTAAGTTCAGCAGCCATTGGCTTTGGCGAGAGAGTTCATCTGTAGCTGGAAGGTCCCAAGTCTGTCTTCTGTGGGGTTCTTCATGTGTCTCAGGAGTCTTCAGTCAGATGAGGTTTTTGGAGGAAGGCAGCTTTGTTGTCTGTAGGCTCAGAAGATGGGCGGGCGCTGTTTTAAGTGGATCAGTGGCAGCAGGCACTATGTGGAGATAGACCTGTAGAGTTGTAACAGAGGAGCAGATTTCCAGCAGGGTGTCTCTGCATAGGGTGGATAGCAAACATTATGCCTGCAATGGTTTGCTTAGGAGCACATCATGGTCCGTTGTTAGGATGCTAGGAAAGTGAGGGTGTTTAAGGAATTTAGTCCTGGAAGGCACCCTTTAAGTCTGCTTTGGATGGCCGAGGAAGAAAATATCATGTTAATTGTGTATCTGGGGTAGGTAGTAACAGTTTGTCTGTAAAAGGAAACCGGTTTTTAATTAAGGATTGGATGACTTTTGAACCTTAAAGGAAATTTTAAACAAGGTGAGAGATTTTTTTGGGACATATATCATGAATGCTAGAGAGAAAATAAGCATTTAAACAAAGAAGCAAGAAAATTTTGGGTTGAAAAGCATGATTTAGGTGTTCCTGAAGGGAGAGCAGAGCCTTCACTGCAGTTTTCACGGGCTTAGCTGGGTGGGGGGCAGGGGCACATTGTACCCTATAGTTGCCTTGTCTTCCCCTTTTGTTTTTTTCTTGGAAAGCAGAAGGAGAAAATCTAACATTGAAGAAAAGATAAGCATAGAGGGTTGGGTGAAAGGCTTTTTAGCCAAGGTGGTTGTCTGCAAGTGCTGCATGGCCCTTGGCGGTCACTTTCGCTTCTGCTGCTGCCACCCACAGCTGCCTGCAGCCTGCGCTGCCCGCCTTTGGCCTGGGAACTCCAGTGCACGGGGTGGGGCGGGGCCGGGTCGTGGTCGCTAAGCATGAGCTGCACTCTCTCGGGGCTGTGGTGGGGAAGGACGAACGGAGCTCAGAGCAACATTGCAAGGGGGGTTGGCAGCAGAGTCTGTGAAACCTTCTGCTGCAGGGAAAACCTGTGAGAGTGAGGGAGAGGGGAGGAAGCTGGACAGGAACACTGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAACCCTAGTTTTTGAACTAGATCACTCACGGTCTTGGGAAATTTGGAGTTTTGATGTAGGTCTCTGTGTGTGGAGCATTTTCTTTAGCTGGTTCTGTCTTGCATCGATAGTTACACCATTGTCTTGCTACGATTTGCGGGGCTGTGGGTGTAGGGGAAGAGTGGAGTGGGAGAGAGTGCCCGTGTCCGGCTTGCCCCACACATCGCTCTTATATTCAGTGTGTCTTTGGGGCCTTGGAGGTTTTCTTTGTGTGTGTGTTGACTTTTGTCTCCTTGCCTAGCAACATACCATGTCTTACACAGCAGGAATCACATTCCATGGTCCTATTTCATAAAAGCAATGCACTATTTTTTCTATGACAGTCTTATATCACCTCAGACCACACAGCTTTTTTGTTCACCGTTCACAAAAGACTGCTTGCAGAAGTGCCACATATCAGATCTTCACTTCTATAAAATATGGTATTTGCACAAGACCTATGTGCATATCTCTGTGTGCTTTAGATATTCTCCAGGTTAACCACAGTGACTAAGATGATCTTGGTGGCATACAAATAGTTGTTATAAGTATTTCTCAAGAGGATATGATGGGGAAATCTGTATGTGTTTAACAGTTGCAGCTCTTTAATTTATATATGAAAAGTTTTAGTCAGCAGTGAATTTAGTCTTCAGATATGGAGAAACCATAAAGCTAAGGGAGTTGTCTCCTATCTCTTAGGAGTATTTCTATGCTTTCTCCTTCACTTAATTTATTTTGGTTTTTCCTCAAGAACATTTTAAAATAATTTAGCTTACTTAATGATTGTCAGCATCCTAAAACTGGTCTACGGTGTTGTAGTGTTTGCATTCTCAATCATACAATTCAGGCACCAAAGATAATGCGCCCCCCCCCCCCAAAGAGTGAAAATGGATACACAGGCAATTCTGGACCATACTATGAAAATAAGCATATCTGGTTTAAAAATTTAACATGTAACTCAAAACATGCTATTATTTTCACCAGGAAATATTTATAAGCAACAAAACCAGGAATAATCTATATTTGTAGAAATTAAGAAACCATAGCCACATATTGTGGGACACAGCTGTAACTCTAGTACGTGGGAAGAGCAGACAAGGAGATCAAGAATTCAAGGGTGTCCTCAATCCTTAACCCTTAATCAGTTAAGAGTGAGTTTGGGTCTAGTCTAAGCTACAGGAAAAGCAATCTCAGAAACAAAGCAGAGCAAAGCAAAAAGTAGTAAGAAATCTTTGCTTAAAATGGTATAGTACTTGGTTCTAATAAATAAGTCTAGAAACCATTTATAAATTGGTAAGACATGGAATTGTTAGAAATTAAATAAGAGCAAAAGGGTTTTTTTTTTTATTAAATTAGAGACAGAAAAGCCAGTTAATGTTTCTCCTTATTATCTTTATAAACAAAATTATCATTGTTTCTCATATGAAACCCATATTTCTAATTGTTTAGAAGAAAGTTAGACAAAGATATGATACTTGATGACCACATTTAAAAAAATTAGTACGTTTTACTGTTTAAGAAACATAAGCCATCCATTGTTGATAGAGTTACCAAAGAAGGCAGAGATATCAAAGACGGTATTTAGGCAGTGCAGTGTGGTAGATCTAGTGTATGCCATGCTATGTGGAAGACATCCAGGGTCTTGTGCTCACAGATAAGCACTAGATGACACAGGAATGTTAAGCAGAAAGTATTGTTCCTTTAAAGAAGAGATGCATAATCTGAGAGATTAGACATGGTTAATACTCTGGTAACTCTTGCAATATCTATATGGCTGAGACTATACTGATTCGTCTCCCAGACAAGTATAGTGATCTTCTCATCTACAAAACTTATCTTTATGAAAGGTATCATACATACTTACAAAGAAGTCAAGTCTTCAGTTATATTGTATACAAAGGATTTAGTTGGTTATCACCTGAGAAGTTTTTACCAAGTCGTTGTGCTTCAAAATGCCTAAAATATGCTATTTGGGGTCAGATTTCTGAAGTTTGAACCAATACCTGCTCCTTAATCATGCTGAGCCTAACTGCCTACTGCGTCTGGCAGATCATATACTGCTGACTGTGGTGATCACAGGGACTCCCACAATGTTACATCATAGTACTTCCATAACTTCTATATACATAGTGTATACCTCATGTTATGCCTCAGTACTCCTGATTTGCCATTTCAGTGTCTGTAGCTTCTACTACTTGCATTCAACAGTGAGTTTAAATGACTAAGTATAAAATCGTAGAGATAAGTAATTCAGTGTTTTAAGCGAGACACGGCCTTGAGCAGCAATGGTGAGATATCATAGCATCTAGTTTAAGCTGTGACTCATTAGTCCCCAGTGCTGTGTCTCAGGAACACTCATTCAGTCAGTGATGGAATCGTATTGCAAAAGTAGAGATTCTGACAGCCCACTCATGCCAAAGAGAAACCGTGGTGCATTTCTTTAAATAAAAGGTACAAAGTACTTCACTTAACTGAAAAAATTGTTTACACAAATTGTGAAAGTTATAACCACCAGTTATATCATGGGTTAAGTTAAAATAGAAATCCCTCTCTCTTTGTCACTCTCTCTATCTCTTGTTCTCTCTCTCTCTTTCTCTGTGTGTGTGCATGTGCGTGAGAGAAAGAGACAGAGAGAGACAGAGAGTGTATGTGTGTGTATGTAAAACTAAGTGTAGCACTGTCTCCAGGCTCAGTTAGTCTATTAGAAGTATTGGAATCAGTCCTTGTAAGTTAAGGAAGATCTTATGGTAGTTATGAACTTCTCTGCTACTTATCTCAGAAGTTCTCAAGTGGACTTAACAACTGTATCCTTTGCACTTCTTAG
Seq C2 exon
ATGCTTGTCGGTGCCCACACTGGCATCATTTGGCTCTGAAATCTGGCTGTGCTGGGCTGATCCTTCTTCTCTTGAGCCTGATTGGACTCAGTGTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030154-Klrb1f:NR_024262:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: