BtaINT0082853 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046389 | KLRD1
Description
Bos taurus killer cell lectin-like receptor subfamily D, member 1 (KLRD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002890]
Coordinates
chr5:100095828-100097268:-
Coord C1 exon
chr5:100097165-100097268
Coord A exon
chr5:100096383-100097164
Coord C2 exon
chr5:100095828-100096382
Length
782 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
AATTTTCTTCTTCATTGCAGACT
3' ss Score
8.76
Exon sequences
Seq C1 exon
GCTTTTATGAAGTTCAGTACCAGTTTTTACTGGATTGGGCTTTCTTATGATGAAGAACATCATGCCTGGTTGTGGGAGGACAATTCTACTCTCTCCCAAGATCT
Seq A exon
GTAAGTTTCTGGTACCAAAACCTTTTTTCCTGTTCTTTTTGAGTTTATCCTTAGATCTGATCAGAGAATTGAATATCCAGAACCATTATAACTAAGGTATCCTATTTTGGGCATGAAACTATAAAAAAGAGAATAGATACAACATAATAAAATTTTTAACCACATCCACAGCATCCAAGTGTTTGCTCAAGAGCTTTCGACATATGGTTTTGTTTCCTGCCTTGGTACAAGTACTTGGATATGTATGCATATGTACAGAATCTCACATGTATGAAAGCAGTCCGGAGAAAACAGTATGTCCATTATTTTTCTTATTCTGGTGGAGACTGATATTCTCAGCATTGACCCATGTTTCAAATATTCTGGGTTTATTTCCTGTATATTTATAAGCTTCAAATCTCATTTTCATTCTTAAATATGAGATTTAACAGCATCATACATTGAGAAATTTTATAATCTGATTTTTTCTTAGACTAGACTTAGTTAATACATCTTTAATTAACATAGAAGCAAAGAATAACACATATCAAAATTATTAAAAACAACAACAAAATCAAAAAATCCCATCTCAATGCTATTGATTATTGAGCATACTGTGTTTTGGTAACATTGTACTCTGAAATTGTGAAAAATGACTTGAATGAAGAAGATAATGACTCAAGATGTAATATCTCATTCAAATGCTTTTAAATGTTCCCTAATTCTATCATTTAGCAAGAACAGCATCCTTGAACCTTTTCATTTCCTGTTCTTGTATATTAAAATTTTCTTCTTCATTGCAG
Seq C2 exon
ACTTCCTTTCCTTAAATCTGTAAATCCAAAGAACTGCATTATGTATACCCCAAGAGGAAGGATTTTGGATGCACACTGTGAAAAGAAGTTTCGTTATATCTGTAAACAACAGCTTATTTAGATGTTTCTTGGGGGCAGAAGTGTTGTGCAATGGAAATTCAGTATTACTTAGAATGGTTACAAATTGTATTACCTACCTCTGGGATCTTTGAAATTTCCCAAATTGTGTTTTATCAATCATATACTTTTCATGTATTTGAAAATATATATTTAAATTTTTTATCACTATACAATTGGTATATAACATTATGTTAGTTTTAGGTATACAACATAACAATAACTAAGACAGTATGCCTAATTCATCAACATATATAGTTACAATTTAAAATTTTGCCCTGTGTTTTAAAATTGATGAAATTTGTGTACCTACACCTGAAATTATAGAGTTAAGATAAATAATTTAATGAATGTTCAATGTATATGGTATGGATTTAACAATTTATGCATCTATTTTTGGAAATTATCTCTGCTGAAATTTAAATAAAACTTAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046389:ENSBTAT00000037859:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(34.3=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.4=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTATGAAGTTCAGTACCAGT
R:
AAACACAATTTGGGAAATTTCAAAGA
Band lengths:
335-1117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]