HsaINT0088974 @ hg19
Intron Retention
Gene
ENSG00000134539 | KLRD1
Description
killer cell lectin-like receptor subfamily D, member 1 [Source:HGNC Symbol;Acc:6378]
Coordinates
chr12:10466009-10469850:+
Coord C1 exon
chr12:10466009-10466112
Coord A exon
chr12:10466113-10467271
Coord C2 exon
chr12:10467272-10469850
Length
1159 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CATTTTCTTCTTCATTACAGATT
3' ss Score
9.3
Exon sequences
Seq C1 exon
GATTTTATGAGCTCCAGTCAACAATTTTACTGGATTGGACTCTCTTACAGTGAGGAGCACACCGCCTGGTTGTGGGAGAATGGCTCTGCACTCTCCCAGTATCT
Seq A exon
GTAAGTTTCTGGCAATCATGGCGTTTTTTGCTCTTTATGAATTTGTCCTTAAATGTGACTAGTAAAGGTAACATCCAGGAGCACTGTGGCTGAAATAACCTTGTCTAGGGCATGAGAATACAGTAAAAGGAAAAAGTACAACAAAATAACAATTTTAGATCTAGGCAGATCTAAACCACTCTAAGTGTTAAAATCAAAACAGAAGATAATGCCTAATGAAAGGAGGTCGGGGTATAGGATAGTTGGTGCAAAAAAATACTGATAACCATTACATGCTTGCCTGTATTATTTTAAATTTTTTAATTAAAAATATATTATTTTGTAGTCACATGGACAACAAAACCAAAACATTACAAATCTCCAGAAAGTGCAATGCATAAGCTCTCTTAGTTCAAATTAAACATTTGAAAGGTATTATATTTCATCCTATATCTTTTGTCAGTTAACTGAAGTGCATTTTTCCTAAATCAATCTTCATACAAGAATGTGAAGAGGGCCAGGGATGGTGGCTTGAGCATCCAAGTTAATGCTCAAGTGACATGAAATTTAGTGTATTCGTGGCCATAAAAGAACTTTTAACATATGCTTTATTTTTGCCTTAGTACCAGCACTTGGAAGTATATGTGCATGTACAGATACTCATATACACAGAGGCAGTCCAAAAAAATAGTATATTTATTATTTTATTTATTCTGGTAGACCCCAATATTCTCAGCATGCTCTTATGTTTTATATACTATAGACTCATTGTCTGTATGTGTGTACTTTTTGAATCTCATTTTCATTTATAAACATGAGATTTGCAGCATCACACAGGGACAAAGTTTATGCTCTGGTTTGTTTTCCTAGACTAGATCAGATAATACATCTTAAATAAAATAGAAGAAAAGCATATCACATATTTAAACCATTAATGACAACAGAAAAACAGCAAGGAAAAAATCCCTGGCCTCAATGCTATTGATTAGTGAGAAAATAACTGGGTATTTTGTAGCATTACACTAGAAAATCATGAAAATTGTGGTTACTGAAAAAAAAAGGACTCAATATGTTAGTATCTCACTCAAATGCTTTTAAAATTTATATCATTTAATTGAAAAATGCCCTGAACATTCTTACTTCCTTTTTGTGTATGTGAACATTTTCTTCTTCATTACAG
Seq C2 exon
ATTTCCATCATTTGAAACTTTTAATACAAAGAACTGCATAGCGTATAATCCAAATGGAAATGCTTTAGATGAATCCTGTGAAGATAAAAATCGTTATATCTGTAAGCAACAGCTCATTTAAATGTTTCTTGGGGCAGAGAAGGTGGAGAGTAAAGACCCAACATTACTAACAATGATACAGTTGCATGTTATATTATTACTAATTGTCTACTTCTGGAGTCTATAAAATGTTTTTAAACAGTGTCATATACAATTGTCATGTATGTGAAACAATGTGTTTTAAAATTGATGAAATTCGTTCACCTACATTTGAGAATTATAAAATTAACATAAAGAATTTTGTATTTTCATTTAATGTATATATTTAATGTTAAATTCAATGTAGTTTTATTACACATTTATGTAATTTTATTTACATTCTTGCTAATTCTCAGCAGAAATTTAAATAAGATTTAATTCACATCAAATAAAATTTAGAAAATAAAATTTAACTCACACTGCCCAGGCTGGAGCATAGTGGCAAGATCATAGCTCATTGCAAGCTCAAGTGATCCTCCTGACTCAGCCTCCCAAGTAGCTAGGACTGCAGGCACCATGTCACTATGCCCGACTAATTTTTAATTTTTAATTTTTTGTCAAGACAAGGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGGGATTCTCCCACCTTGGATTCCCAAAGTGCTGGGATTATAGGTGTGAACCACCATCCCTGGCCCTCTTCACATTCTTGTATGAAGATTGATTTGGGAAAAATGCATTTCAGGTAACTGACAAAAGATATAGGATGAAAAATAATATCTTTCAAATGTTTAATTTGAACTAAGAGAGCTTATGCATTGCACTTTCTGGAGATTTGTAATGTTTTGGTTTTGTTGTCCATGTGACTACAAAATAATATATTTTTTAATTAAAAAATTTAAAATAATACAGGCAAGCATGTAATGATTATCAATATTTTTTTCCACCAACTATCCTATACCCCTGACCTCCTTTCATTAGGCATTATCTTCTGTTTTGATTTTAACACTTAGAGTGGTTTTCTCTGTTATGAATCAAAGCTGATCTATTTTCATCATTTTTGTGATGAAAAAATTAATTTTGATTGACTTAGGATGGAAGGATTTGGACTGGGTGTGGTGGTTTATGCCTGTAATCGCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTGGCTGGGTGTGGTAGTGCACACCTGTAATCCCAGCTATTTGGGAGGCTGAGTCGAGAGGATCGCTTGAACCTAGGAGGTGGAGGTTGCAGTGAGTCGAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCCAGACTCCTCTCCAAAAAAAAAAAAAAAAAAAAAAGATGAAAGGATTTGGAACCTTAATTGCATCTGAAAAACTGCCTCACCTTTGTTATTTAGTGTACTCCAACCACGGAGTAACATCCCATCATAATCCCAAATCCTACTCAAACAAAAGGGGAAGGGATTATGCAGGTGTACACTAGGCCACTGGTGTACCAATTAGAAACCACTTTAGAGTTATGCCTACTGTACCCACATAATCCTAAAAATATGTTACAACTGCTACTTCATAGTTTATGCCACTTATTTTATTTTTTACTTTTATTATTTTTTTTTCTGAGACACGGTTTCATTCCCATTGCCCAGGCTGTAGTGCAATGATGCAATCATGGTTCACTGCAGCTTCAACTTCCCAGGCTCAAGGGATCCTCCCACCTCAGCCTTCTGAGTACTTGGGACTCAGGTGCGAGCCATCATGCTCAGCTAATTTTTTGTATCATTTGTAGAAATGGGGTTTTGTATTGTTGCCCAGGCTGATCTTGAACTCCTGGGGTCAAGGATTCTGCCCGCCTTGGCCTCCTAAAGGGCTGGAATTACAGGCATAAGCCACTGTGCCCGGCCAGTTTATATAATTTAAACACTGCCTTTTGGTTCCTTGATTCCCATATGCTAGGACAAGTAATTATTATTTTATTTTATTTTACTTTAAGTTCTGGGTTACATGTGCAGAACCTGCAGGTTTGTTACATAGGTATACATGTTCCAAGGTGGTTTGCTGCACCTATTGACCCATCATCTAGGTTTTAAGTCCCACATGCATTAGGTATTTGTCCTAATGCTCTTCCTCCCCTTGCCCCCCACCCCCCGACAGGCCTTGGTCTGTGATGTTCACCTCCCTGTGTCCATGTGTTCTCATTGTTCAACTCCCACTTATTAGTAAGAACATGTGGTGTTTGGTTTTCTGTTCCTGTGTTAGTTTGCTGAGAATGATGGTTTCCAGCTTCATCCATGTCGCTGCAAAGGACATGAACTCATTCTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCATATTTTCTTTATCCAGTCTATCACTGATGGGCATTTGGGTTGGTTCCAAGTCTTTGCTATGGTAAATAGTGCTGCAATAAACATACGTGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134539-KLRD1:NM_001114396:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(34.3=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.4=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTGGGAGAATGGCTCTG
R:
TCTCAAATGTAGGTGAACGAATTTCA
Band lengths:
352-1511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)