MmuINT0088270 @ mm10
Intron Retention
Gene
ENSMUSG00000030165 | Klrd1
Description
killer cell lectin-like receptor, subfamily D, member 1 [Source:MGI Symbol;Acc:MGI:1196275]
Coordinates
chr6:129596862-129598775:+
Coord C1 exon
chr6:129596862-129596965
Coord A exon
chr6:129596966-129598348
Coord C2 exon
chr6:129598349-129598775
Length
1383 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CATTTTCTTCTTCATTACAGATT
3' ss Score
9.3
Exon sequences
Seq C1 exon
AGTTTTATGAACTTCAGTCAAACCTTTTTCTGGATTGGAATGCATTATAGTGAAAAAAGAAATGCCTGGCTATGGGAGGATGGCACAGTTCCCTCAAAAGATTT
Seq A exon
GTAAGTTTCTGGTTGTTGAGGATTTTTGGGGTATGTTTTGTGACTTTATCCTAGCTATGGTTATTGAAAAATCACAGCCAGGGGCTCAGAAACCCAAATACCTTGTGTGGAGCATGAGAATATATAAAATCTATAGGGAGTGGCAGGACAGCAGTCACTGCTTTACCCATAACATTCAAGTTTATGCTCAAGTAATATGAACATTGAGTGCCCAATACCATAAGAAAATTTTAGTCTTCTCCTTACTGTAACATAGTAGGAACACCATATGTGTCTATGCATGCTCAAGTGATCTCAGATACAGGCTGGCCCAGAGAGCACAGCTCATCCATTTTTTGTTGTTTTGATGGATCCCATTTTTTAATTATCTTCAAATATTCAGCAATTATTTTCTGTATAAATGTTATCCTTGGATTTCATTTATATACATGAAATCTAGAGACTCATATTGGGACAAAGTTTATGTTTATGCTCTTTCACCTAGATTATATCAGCATATATATATATATATATATATATATATATATATATACATATACATACATATATATATATATTTTTTTTCTTTTATACAGTATAATATGATAACAACTTTCCTTTCCCTAATTCCTCCAAGATTGTCATCCCCTTAAAAATACAAACCACACATAAGGGCAGTCCCCATTATGCCCAGCAGTAGTTGACTGGTAAAAAAGTGGTATTTTTGGAGGGTGTTCTGTTTTGCTTTTTAATGCTTTGTTTGGGTACGTTTTTATTTAATCTTTCAGATATTATGGTTTTCAACTTTGCTTTTATGAGTTATCTGTGTCTGCTAATGTGTATATCTACATGTGCATGTGTTTCTTGGGCCTTCACTTTTGTTCTTTTAGTTTTGTTTGTTTGTTCTTAACCAAATAGAAGACAAGAATATCATCAAAACCATTTGGCCAGGCAAAGTGATACATACCTTTGATTCCAGCACTACACAGGCAAATGCAGGCATATTTCTTTGAGTTTGAGGATGGCCTGGTCTAGGTAGTGAGTTTCATGTCAGCCAAGGCTGGGTACTAAGACTTTATCTCAAAAAACAAAATTAACAATTCAACCATTTCTGATAGAGGTGAAAAGCCCACAAATAAACACATAACAAAACCACACCTAGAATCACATTCTGTGGTCTTAGCACTAGGGACCAGTAAGAGAGTAATTGAGTTTCGTGTAGCACTGTACTTTAGAACTGTGAAAGTTGGTGCTGAAAGATAACCACATAAGGCCAAACAAACAAAATCCCAAGCCACTCAGTAAATTTCTCCATCAAGTGGTTTCCCATATTCTGAGTTAATAAAAATAACCTTAAACACCCTTACTGTTTTACATATGTTAACATTTTCTTCTTCATTACAG
Seq C2 exon
ATTTCCAGAATTCTCAGTTATCAGGCCAGAGCACTGCATTGTTTACAGTCCAAGCAAAAGCGTTTCTGCTGAATCCTGTGAAAATAAAAACCGTTACATCTGTAAGAAACTGCCTATTTAAATGTTTCTTAAGGCAAAGGGTATAGACAAGGAAGGTCCACGGTTACTAAAAATAGTAACAGCTCTCAATATTACTACCTTTCCATCTTGTGTCTGTAGAATGTTTTTGTTTGGTAGTATATAATTCTCATACATTTGTACCCAAGTAATTTATACTTGATGGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAGAGAGGTTTTATAAATATTTTGACTTATGAAATATAATTTTATTCAATATTCCTGTAAAGTTTTCTTGGAAACATTAAATAAAATTTATTCTACACCAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030165:ENSMUST00000112063:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(34.7=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.4=87.8)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCTGGCTATGGGAGGAT
R:
ACACGTGTGAAGAAGCCATCA
Band lengths:
342-1725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types