BtaINT0084076 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33236539-33240314:-
Coord C1 exon
chr24:33240158-33240314
Coord A exon
chr24:33236663-33240157
Coord C2 exon
chr24:33236539-33236662
Length
3495 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GGGTTTTTGGTATTTTTCAGAAT
3' ss Score
8.86
Exon sequences
Seq C1 exon
GCCTGAAAACAACTACTATTTTCCGGATTTGCATCACATGCGGTATGAGATTGAAGACGGCACTACACCCGGTGGAAGAGCACTTCGGTTTGGGTTTGATCCTCTGGAGTTTCCAGAGTTCAGCTGGAGGGGGTACGCTCAGATGACTCCGGTACAG
Seq A exon
GTAAGCAGCCAAGGGGACCAGCCTCAGGGCACAGCCGCCCAGGCGTTCGCCCACAGCTCTCTCAGCGGGTCCCCCAAAAGGTGGACTCTCCCCAAAACTGACTCCAGCATTCTTGTTCTGCGGAGTATGGATGGGGCTCGGGCTAAGGTTGGATTTTATATTAAGCGTATATATCGATTTCAAAGCTTACTGTTACTTTAATTTGGTCACCAAGTCAGAAAATGAAGCCATTAAAGATGGTGTTTATCCCTGGAGACTTTTTTAAAAATTGTGTAACTTTTAAATTTCAGCATAATAAAAATAATTCAAAAAAGTAACACAGACTATTGTCTAAAAAGTTTACAGCACATACACAGGTAAGAGAAAAGCCACAAGTGAGAAAGGTTTCCTCCAACACTTAAAAAAAAACATGAAATCGTCAAATAAAATAAACAATGTACAAAATAAGCAATGTATGAGGAGATAATCCCTTAAAGAAATTTTCACAAACCTGCTCTTCTTTATTCTGACTATATAAATTTAGGTGATACTAAACATAAATTGTGTCCTATTGTGTCTAATATGTTGACTGTCAGCTCCATTCTTTTTATAAGAAGTTTCCCAGGGACTTCCCTGACCATCAAGTGGTTAAGACACTGCAGGGGGCTCAGGTTCAATCCTTGGTCGGAGAGCTAAGATCCTGCATGTTTCGAGGTGTGGCAAAAAAAAAAAAAAAATTAATTAAAAAGAAGTTTCCCAAATGAGATTAGGCTCTATTTTAACATGAGAGACCTTTTTCTTTAAAGCCATTTGTGGAGAATAAAAATGAGTTGACAAATAATGCTAATAAAACCTGTATTGCTGATTTTTGACCAATACTTAAAAAAGATTTTTTTTAACTCTGAATTACTATATGAACATAAACTAAGATAGAGGAGGAGTTGTAGTCAGTGCTATTCCATTTTTCTTTCCATATTTCTCCTTTCCTTCAGTCCTCTCTACTGTCTCCATTTCTTTTGGCTTTGCAGTGGAATAATTAAGGAATTTACACATTGCCTGTTTGCCTTTGGAAAATGTTGCCTATGCAACATTTGTAACAACATTTCTGTATTATAGTCATTGAGTAGTTTTGTTCTTAGAATTTCCCTTTGAGGTTGTTCTCTTTAAGCTGTTGCTTAGTGGAGAAATTGAGAATCAAGAGGCAAGTTGATGATAATTGTAAGTCAGTACATGTTGCAACCGGGAGTCCGAAAGCCACAGCTGAAGTTCCCGTGTGCCGCAACCAGGACCTGGCGCAACTAGATAGGTAGATAGACAGATAGATAAAATAACTTAAAAAATCAGACAGCTCTTAGAGAAACAGGGATGGGCTCACAATTCCCTAGGAGCCCTCATTGATTCTAATGTTGCTACTCGCCTGGCAAAGTCCCCTATCTAGGTTGCCTTTCTTTAACAGTACCTAGCAATCTTAGGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGATGGGCTGTAGTCCATGGGGTTGCAAAGAGTCGGACATGACTGAGCGACTTCCCTTTCACTTTTCACTTTCATGCACTGGAGAAGGCAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACTGGGAGCCTGGTGGGCTGCTGTCTGTGGTGTCACACAGGGTCGGACAGGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGTCTTAGACACTTCACTGTTTACTGTTTTCCCCAAATATAGCAATTCTTTGGTTCCCTCCTCTTACTCCACTGTTCAGAAAAAGGCAGGGATTCCACTGAGTCATAATAGGATGTGAGTGCAGTGACTAAGAGCCCAGTTAAGGTATATACCTCCTCCCAGGTATTTGCAGTTTGAGAGAATAGCTGGTTAACACAAAAGAATGAATTTCTAATGATGGATTTTTCTGTTAGTATTTTTAGTCAGAGAACTTGGGTGGTGTTGCCTAGAATCACCACTTACTTTACTCTGCCCTTAATACATTCTTGCATTATTATTTTCCAGTGTGGAATTAACCCTTAAAGATGTGAAAATGAAAGTGTTAATCCCTCACTTGTGTCTAACTCTTTGGGACCTCACAGACGGTAGCTCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGCGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCTGACCCAGGGATCAAACCTGGGTCTCCTGCATCGCAGGCAGATTCTTTACCATCTGAGCCACCAGGGAAGCCCTAGAATCAACCCTTAAAGATGAATTCCATCAAATTGTGAGGGCCATGGAGATCCTCACTGTGGGTTGGCTGCCACCTCTTCTCTCAGAGCAAGGGATTCTACTTAGCTCCAGTCTTTACTGTCATCGAGGTCTCACTCAACAAAAATCCCCTTCGTTTCAACCAAAGGAGCTGAAGGAAAGGCCTAAAGAACTACTGATTTAGAAATTTCCATGTTTCATGAACTTTCCTTGGGATGCAACTAGATCTGGACATGTGGTCTGTGGTTCAGAATTGAAGTAGTCCAGACTCTCCTTCAAGGTCGTGGGCACAGCAACACTTACACAGCATTGTATGAGGACCAGAGACCTGGGGACCAGCAGAACTCCCTGTCCCCAGCAGAGAGCCCATGTTTTTCTCCAATAGGGATTGAGATAAATCCCATATTATTTAGCAGGTGTATTTTAGTTACTTCCAGATCTCATCCTTTCCTTGGGCTTCCTTGCTGGCTCAGATGGTACAGAACCTGTCTGCAATTCAGGGGATCTGGGTTTGATCCCTGGGTCTGGAAGATCCCCTGAAGAAGTGGGTAGCTACCCAGTTCAGTATTCATGCCTGGAACATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGCCCACAAAGAGTCAGACACGACTGAGCAACTAACCCTCACTTTTCCACAACCTCTTCTTGGCCTCCACTGGTTTCTGTGACTGTTTCAAGTGTTATGTATGTGAAGTAGACTCCGGAGTTGTCTCTTCCTGATGGGGCTGGTGGTGGTCTCTAACATACTTTCTTTTCCTTCTCTTCTGTCTTTATTTCTCCCAGCCAGTGGTGGTTGCCCCTGTCATTGTGGCTTTTCCTAAACTAATTCATCTAACCTTCTGCTCTGTAAGCCTGATTGCTAAAAGGTCAAAAGAGGAGCTTGGTTGCTGAGGGGAGTGTGTTTTCACTGTGACTTTAATTGTAAGCGATTTTAATTGATTGGCTGACTTGCCTGTTTTCATGTTTCACAGAGTTAGTCACTTGGTGCTTGTTGAGTGGGTGTGCATGTGGTGTTATTTGAGTGTGTGTGTGGGTGTGGGTGTGTATAGTGAAGCCCAGTAGTGAAACTTTTGAATAACGTCACTGTTTGGCTAACATTTCTTTTAACCAGTTGTCTCTTCTATACTTTATGGGTTTTTGGTATTTTTCAG
Seq C2 exon
AATGAAGTAAGAATCATGTTAAATGTGGGGAAGTCAAGTCTCTCCTTGTTTCATGTTGTTCTAAGATATATGAACCCTGGAACTGAAGCAGTATCTGGTCGTATAACCATTTATCCATCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181:ENSBTAT00000060991:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(28.3=24.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]