HsaINT0090222 @ hg38
Intron Retention
Gene
ENSG00000053747 | LAMA3
Description
laminin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr18:23819841-23822375:+
Coord C1 exon
chr18:23819841-23819997
Coord A exon
chr18:23819998-23822251
Coord C2 exon
chr18:23822252-23822375
Length
2254 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
GGCGTTTCGGTATTTTTCAGAAT
3' ss Score
8.08
Exon sequences
Seq C1 exon
GCCTGAAAACAACTACTATTTCCCAGATTTGCATCATATGAAGTATGAGATTGAAGACGGCAGCACACCTAATGGGAGAGACCTTCGATTTGGATTTGATCCGCTGGCATTTCCTGAGTTTAGCTGGAGAGGATATGCCCAAATGACCTCAGTACAG
Seq A exon
GTACGCAACCCGAAGAGAGCAGCTTCATGGCTGAGTAGCTCAGATACTTCCCCACACCAGTCTCAGGGAGCCCCCTGAAAGGTGACCTGTCCCCAGAACTGATTCCACGATTCTTTTTCTCTATATTATGGGTTGGCATTGGAGTTTAGGTTAAACCTGGGGTTTGGGGTAGGGCTGTATATTAACTGATAAGCATATGTGTGGATTTCATAGTTCATTGTTACTTTAATTTGATTACCAAATCAGAAAATTAAGAGATTAAAGAAAAATAGTGTTTATCTCTGGAGACTTTTTATAGAAGGGGGAAGTTTCCTAAATGACGTTAGGCTGTACTAGAATGTGAGGGACAGTTTTCTTTAAAGCCATTTGTGGAAAACAAAAATGAGTTGGCTTAAGTAATTCCAGTAAAGCTAGTGTTCCTAATTTTTGGCTGATGCTTTTTTTAAACTTTGAATTGCTATGTACGTGGAAACTAAGATAAATAATGAATGTTTGTTAGTTAAGTGCTATTTCATTTTTCTTTTCCATATTTCTCTTTCCTTCATTCTTCTCTACTGCATCCATCTATCTTGGCTTTGTATTAGAATGAGTAGGGGAATTTATACATTCTTTGTTTACCTTTAGAACTTATACGTCTTGCTACTTATAACTAAAAAATTCTGTATAGCCATTGAGTAGCTTTGTCCTCAGAATTTGTCTTTGAGTTGGTTTCTTCAAGCTGTTTCTCAGTGGAGAAATTCAGAATATGAGAGGTAAATTAACGATCATGGTAACACAGTCTTTTTCATTAGCGCATCCAAGACTGCTGCTTGCTGTTGCTACCCCAGTCAGCCTGTAGAGAAGCTGGAACAGGGCCACAGTACTCTCAGACCCCTTCCCCTCATTGATTCTAATGCTGTTTTTTACCTGGCCAAAGTCCCCCATCCAAGCGGCCTTTCTGAAATGGTACCTAGGATCTTAAGACACTTCACTCTTTGCCCCCACTCCCCAAATACAGCTATTTAATTTCTTTAGTTCCCTGACATTACTTCACTATTCAGAAAACAAGCAGTAAATTCCATTGTGTCATAATAAGATGTGAATGACTGACAACCCAATCAAAGGGTATACCTTCTCACAGGTGCTTACAGTTTCACACAATAGCTGGTGGACACAAAGGAATTCATCTCTAATGACGCATTTTCTGATAAAGTTATTTTGGTCAGAGGACCTTGATGGTGTCCCCAGCATCACCACTTACTTTACTCTGCTCCTAATAGATTTTTGCATATTTGTTTTCCATCTGAAACTAACACTTAAAGATGAATTCAGACGAATTGTGAGGATCAGCAGGAGTTCCTCAGTGTGGGTCACCTGTAGCTCCTGCTTTCAGAGCAAGTGATTCTGCACAAAGTCAGTCTTTATTGTCACCAATATCTCGCTTAAAAAAATATCCCCTTCCTTTTAAACAAAGAAGTTGGGGGAAATGCTAAAAGAACCACTGATTTGGGAATTTCCAAGTTTCATGAAGTTTCCTTGGGCCACAGCCCAATCTGGACATGCAGTCAGTGGTTCAGAATTAAAATAGTCTACTCTTTCCTTCAAGGGTCCAGGCTCCACAATGTTTACAGAATATTGTGTGAGCCCAGGCCCTGGGGACCAACAGAACCCCTCCTCTAGGTTGAAAAGCCATCATTTCTTTGCATAAGGAATTGAGATAAAACATCATACAACTTAATAGGCATATTTTAGTTACACCCAGATGTTACCACTATTGTATTTGGAGTCTTTAACCTTTCCTTGGCCACCGTTGGTTTCTGTGACCATTTAGACTTTATGTATGTGAAGCGGACTCTGAAGCAGTCTCTCTTTGGTGGTGTGAAATAATACCCTCTCCTTTCCTTCTCTTCTGCCTTTTTATTTTTCCTAGCCAGTGGTGGTTGCTCCGTCACTGTGGCTTTCTTAAACTAGCCCATCTAATACTCCACTCTGTCTGCCTGATTACAAAAAGGTCAAAAGAGGATCTCAGTTGCTGAGGGAGTGCGTTTTCACTGTAATTTTGATTGTAAGTGATTTTAATTCATTGTTAGGTTTGCCTATTTCCATCTTTCACAAGTTACTCGGTGCTCGTTGACTGAGTGTGAGTGTGTATGTGTGTGTATGTGTGTACATTACAAGTCCAGTAGTGACACTTGAATAGAATAAAGTCACTGTTTGGCTAGCATGTCTTTTAACCATTTTTTTCTATGCTTTATGGCGTTTCGGTATTTTTCAG
Seq C2 exon
AATGATGTAAGAATAACATTGAATGTAGGGAAGTCAAGTGGCTCCTTGTTTCGTGTTATTCTGAGATACGTTAACCCTGGAACTGAAGCAGTATCTGGCCATATAACTATTTATCCATCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000053747:ENST00000313654:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(29.8=26.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development