GgaINT0098638 @ galGal3
Intron Retention
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106323615-106327088:+
Coord C1 exon
chr2:106323615-106323774
Coord A exon
chr2:106323775-106326955
Coord C2 exon
chr2:106326956-106327088
Length
3181 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TATTAACTTCCATTTTTCAGAAT
3' ss Score
8.48
Exon sequences
Seq C1 exon
AAGACCTGAGAAAAACTACTTTTTCCCTGATCTGCACCACATGAAGTTTGAGATTGAAGATGGTACAACAGTCAAGGGAAAGGAAATTCGGTTTGGCTATGATCCTGAGGAATTTCCTAGCTTCAGTTGGAGAGGATATGCCCGGATGTCCTCTATACAA
Seq A exon
GTAAGGTGGTATTTTGCCCTAAGCTTTTGGCTGAGAACATAGATGTACGATACGTATTCCCCCACTGTACTACTTTATGTGCACAAGGTCATGAGCAAAACTGAAGAAAGGACAGAATCTCACTGATCTGAACATTTTGGAACTCCATCACTGTTTCAGTTACTAACTGTTGATGTTACTTAAAGTTCATCATTGCTGGTGCAAATGTGTTCTTTAGCAGTGTCATTTGAGAGTTGGTTTTGGGTTGTTTTTTTTTCTTTTTGATGTAGGTTTAAACGAAAGAACTAGTAGATCTAAAGTATCAAATGCAGAAGTTGTTATCATTGAGGACATTCAAAACAGCGGCAGATTGACATTTGGCTAAATCACTTGGATTACAGAGATCCAAAGTAGTCTGTATCCATGAGATTTTCATCACAGAGCCAATGACTAAGCTTCACGCTTGCGTCTCGTGTTGATGAGGAAGAGAAATTTGCCAACTTTATGAGGAATTATACCTTTCTATTACAGTAAACAGGAAAATGTGCGAGTCAGTAAAACAAGATGAGGGCAGCAGCTCTCTGGCAACATTTAGTCTCTGACAGTGCAGAAATGAAAAAACGACAGCAGGAATAAGTACACTGCAAGAAGAAAGTCAGCAAAATTTAGTTGTATGAGGACCTGTTTGTAGACTGAATTGCTAAGCAAGTGTGCCAGGACTTTAAAACAGTAGATTTGAGCAATAAGTGGGATTTTCTCATTGTAGTCTCGAAGTAGTACTCTGCTATGTGGAGTACTCTGCTGATTAGATTTTTTAATCCTCAGTTATAATTGTGTTCAGCCTCTGTAAGCTGTCTGAAGGCAGATGGGCCACTCCAGACAGACATGAGTACACAACCATTGTGCAAACCTACTGCTTTTTTTTCTGTTATTCTTTTTTTCACTCTTTATTCTTCTTTTATTCCAGAATCTCCTTTGTGTCTGGAGTTGTTTTGTTTTGACTTTTCAGAATTATTCCACTTCCACAAATGAAGGCAACTCCTCAGCAACTGTGATTTCTTAACTTCTGCTAACTTTCTTAACTTTCTAACTCAGAGGCTTTTTGCATTTCATGCCCATCTGGCATTTTGTGAAGAAGCTGTGAGCAGTTTCTAATCTTGGTGGAAACATACATTACTTTGCTCACCTGAATAGAGCTTTTCAAGTCATATAACTAATTGCCATATCTAGGCACTCTGCAGTTAGATCCTTGCACAAACAGTCATATGTTGTTCATTTCAAGGGACTTTCAGAATTTTGACATAGCTTTTGTGTATCTTACAGCAGTTTGAAATATTCTTGACGTTTATTTTCTGAAAGATCAGTAGTGTTACAATATCTGCCACACAAAATTCTAAAGTAACAACTTTTTGTGAAGCTATTCCAGTAAATTTTTTTTAAAAAGTGAATAGCCTGTGGATGGTACCCAGTGTTGCTGTGCTGCACCCATACTGCTGACATGGGTCTTTCATTATGGGCTGAGAAGCTGAGAGCTGCGTTAAGATGTTAAAGCACTGGCAAGAACTACCTAAGTCTGTGGCAGAGTTCAAAGACTAATTTTTCACCATTTCCTGCTTTTGCTTGAAGCCAAGAACTGACATATCTTTCTCCCTCATTACTCACGTATGTCATTTTTCTTTCTTCATCTGTGTCTTCTAGATGTTCCACAAAAGCTTAGGAACTTCTGTTAAGCTTTCTGAGGCATGTTTATTTTTTTTACCTTTTCTTTTTTATTTCTATCTATTTTCAGGTGTACCCTCAGTGCCTGTCTTATCCTTTCAACAGTCATTCTTCTCCATTTAAAACAACAGTTGTAAAACCTTCCCCCACATCTGTTTTCTCTCCTGGTCTGCAGTCACTGATATTTTGTCTCTAATCTCGTATCCCTATCATCTGTTGTATGTCCGTCTTTGCTTTCTGCTTTGCATTTCTATTTAAAAAGTGGAGATATCTGTGATGATCAGAATCAAGTAATACAGAGCTGGCACTGTAACACTTTTAGCAGTAAGAGAAAATTTATGCTCCCTTCTGAAAGGTATAGAATTTGGAAAACTTTGGGGATCTGCTTTTGGAGATGCAGAATCAGCCAGTTATGGGGAGGTTAACATGCAAGAAGCATCTTGAAATGGGATGGTGAGTGGATTATGTTGGTGGGAGTTGGATTGTGATGGGAGCTTTATAATTTAAGATGGAAAAAAGAAGCCAAAGTCTTGAGAATGCACCAAGCCTTTTTTTTTTAATTTGCCAGCAACGTTTGAACAATTCTCTGCTGATTCTGTTGTTCTGCAAACTAAATAATGGGAGCTGTGCAAACTTGGTCTCCTGTGAGCTCAGTGCCAGACCAGGGCTTGTGAGAACCATATAGTTCCAGAGATGTCAGTTCAGCCTCATGGCAAAACAATCGTGGTATCACATCTCTAAGATGCTGAGGAATGTGGTAGAGGAATAGAAGAAATTGCAGTGTCAGTCTGAGATGTCTGCATACTATAGGGCATTTTGTGTGATCTCGAAGTCAGTGGTTCTGGCCTATTCCCGTAGTGCCATACGTTTCCTTTAATGCAGAGGCAGGGAGAATACCAGTAGAACACTGCCCATGTTTCAAGGTGTAATATCAACATGCATGTAGCTAAGTCGTTCTATATCTTTCCAGGTAAGCTATTAGTCAACAATTGCTTTTACAGGAGGTTTAGTTCCATATTCTTTTGTAAGCTACCTGAGCCTTCCTTTTCTGTTATAGAGTTGTCTTTGCCAAATGTTTTTTCTTTCTCTGGGTGCTAGTAACAAATAATATACTCTCCTTTCCTCCTTTTTCTCTTTCTTTTTATTTTTCCCAGCCAGAGGTGGTTGTGACTGTCACTGTGGCTTCCCCTAAGCTCTTCCACCTAGTCCTTCGCTATGTCAACCTGGGTTCAAAAAGCTCTAAAGGAAAGATTTCAGTTGCTGAGGGAAAACATTTTGGCACTAATTATACTTGTAAGTGACTTAATTTTCTCACTAGGCTTACCTGTCTTCATCTGTTATACACAGCACTGTCATTCCAGTACGTACTTGTCTGCATGTGCGTTTTTCTTGTAGGCTATCAGTATGGTGCTTGCATGGCTTCTAACTGTTCTTCTGTTTAGCACTTTATGGCTGTTTTTGTTTATTAACTTCCATTTTTCAG
Seq C2 exon
AATGAAGTGAGGATAACTTTGAATGTGGAAAAATCAAACCTCTACTTATTTTGCATTATCCTGAGATATATTAACCCTGGAAGTGAATCATTATCTGGCCGCATATCTGCTTGTCAAACTCGGCCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056:ENSGALT00000024287:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(28.3=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]