BtaINT0084113 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33119215-33121763:-
Coord C1 exon
chr24:33121661-33121763
Coord A exon
chr24:33119332-33121660
Coord C2 exon
chr24:33119215-33119331
Length
2329 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CTCTTCCTACTTTATTTCAGAAA
3' ss Score
9.15
Exon sequences
Seq C1 exon
ACAGTAATAAAGGAAGATCTTCCAAGAAAAGCGAAAACTCTGAGTTCCAACAGCGATAAACTGTTAAACGAAGCCAAGATAACACAGCAGAAGCTACAGCAAG
Seq A exon
GTATGGAAGGGGTGGCTTTTGGGGGCTGGGATAGTCAAGAGCTTGGAAACAATCTATGAGACCAGGAGCAAATGCACTTCTTGAATCTCAGTGTCCTTGTAGGTGGCACTTTGTAAATATGTTGATTTGATGTTTCTACCCTTCCCAGGTGGCACTAGTGGTAAAGAATCTGCCTGCCCATGCAGGAGATGCAAGAGATATAGGTTCGATCCATGGGTTGGGAAGATCCCCTAGAGAAGGAAATGGCAACCCACTCCTGTGTTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTAGGCTACAATCCATGGGGTCACAAAGAGTCAGACACAACTTTGCAACTGACTACCACCAGCCAATATTCTAACATAAACCAAATTAGTTAGAATCTCATGAATCTAAATAAATCTTGAGACTGATAGGCTTGTTTGGGTCTGGCCTTGGATTTGGGAGAGAGGATTCTTCATTTAGTCCCATATGCCCATAGCACTGGGGACCCACGTAGCTTTGAGGTGTGTACAGTGCTGCTGTCTTATTTAAGGCCCAGATAAATAGCATCAAGTCATTAGAGCAACTGCTTCAAAATTTCTTAAGCCCTAAAATCTTAGTAAGTAAAAGCACCAAAAATCACTACCACTGTGATATATGAGGATTTTTAAATTTTTTGCCTTTGAATTTTTCCCCTTATTTAATTTGATTTAAAAAAAAAAAAAATCTCAATCTCACCAAATTCCTGTGTTCAGAAAATGCTGTCCCTTGATTTTTCTCTGGTCTCCTGTGGTCATTCATAGGTGAGCAGATATCTCAGTTCATAGCCCTCATTCACCTTCTTAATCCTTTCAAAGTGATTAGATACCCTCTACCAGTAAATAAATACATTTATTTATCATTTGGATTTTTTAAAATGAAAAAGTGAAAAAGAAAATACACAAAAATATGTAGTCTGCCTAGCACATTTCAAAAATTAAAATTTCCTGGTATGACCCCTGTTCTCTTTATAAAATTTGAGCTAAAAGGTGAAGATGTGTGTTTTTAGAAGGATTAGGATGTTAACTACATTGTTATTTAAACCAGTCCTGGAATCACAGTTTAAGCCATGTGTCATCAACTCGACACTAAAGCATTCATTGGTGGTTTTCCATGACCCCCAAGGGGCGATATTATCAGCTAGAAATGCCTATGAGCTTTGTTCCTTTCACTGAATATGTCCTTGAATGCGTCAGTTTGGAAATGAATGGGAATGGTGCCTGCTTTGTGAGTTTGCTTCAGTGGGGCTCTCTCAACAACATTCCTTTACTCTTTTTTAAAAAGGCATTTTATTTATTTACTTATGGCTGAGCTGGGTCTTTGTGGTTGCTCAGGCTTTCTCTAGTAGTGGAGAGCAGAGGACTACTCTGTAGCTGCCGTGTGCAGGCTTATTGCAGTGGCTTCTCTTCTTGGCGAGCATGGGCTCCAGGGCCCTCGGGCTTCAGGAGCTGTGGCACATGCACTCAGCTGTGCTCCCAAGCTCTGGAGCACAGGCTCAAGGGTTGTTCCTCGGCATGTGGGATCCTCCTGGATCAGGAATCAAACCCCTGTTTCTTGCATTGGGAGGTGGACTCTTTACCACTGAGCCACCAGGAAAGCCCAATATTTCTTTACTCTTGACCAAAGGGGCATCCCTTATGTATTATTCATTCATTAATTTATTCATATATTCATTCGCTTGTTCCATAAATATGTACTAATATTTTACCCCAAAGAGTATTTTACCCCAAAGAGTGCCTGGACACAGCAGTGAATAAGATAGCACATCCCTTTCCTTGGGTGTCCCTCGTATCTCAGTTGGTAAAGAATCTGCCTACAATGCTGGAGACCGGTTTCAATTCCTGAGTCTGGAAGATACCCTGGAGAAGGAAACAGAAACCCACTCTAGTATTCTTGCCTGGAGAATCCCATGGGCAGAGGAGCCTGGTGTGCTACGGTCCATGAGGTTGCAAGAGTCTGACATGACTTAGGGACTAGACCACCACCACCATCCCTTTCCTTTACTAAGCAGAGACTTTTGCCCTGAGCAGAGCGGAAGTTAAGTCTTTCCTTGAGTTGGTAGGCCTTTCCCTTTCTTCATGTGCATTTCCGAGGAGCCTGGTACCACAGGTTCTGTATGCTCCTGGCTTCTATAATGGAGGACCTGGGGGTCTAGGAGCAAGCAGTGGGCATCTTGGGGATGACCCCTAAGATGCAGGTCTGCTCAATGCTGTGCAGACCCTGGCTACTTCAGGGGCCACCAGTACCCACGGAGGATCAAGATCTTTAGGGTAATTGCCTCTTCCTACTTTATTTCAG
Seq C2 exon
AAATCAGCCCAGCTCTCAACAACCTGCAGCAAACACTGAAAACTATGACAGTTCAGAAAGGCCTGATAGACACCAATCTCACCAGCATCCGAGGTGATCTTCGTGGAATACAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181:ENSBTAT00000060991:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]