GgaINT0098671 @ galGal3
Intron Retention
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106371544-106372245:+
Coord C1 exon
chr2:106371544-106371643
Coord A exon
chr2:106371644-106372128
Coord C2 exon
chr2:106372129-106372245
Length
485 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GGGCCTTCACTGTTTTGCAGCTA
3' ss Score
6.96
Exon sequences
Seq C1 exon
ACTGTGAAGAGAGAAGACCTATCAGGAAAAGCTGCAAAGTTGAAAGCTGAGAGCAGTACACTCTTGAATCAAGCACAGGAGACTGAAAGGACACTGAAAG
Seq A exon
GTACTGAGAAATAAAGTGAGAATAGAAATGTTATCATAGACTCACAGAATCATGTAGGTTGCAGAAGACCTCTAAGATCATCAGGTCCAACCATCAACATGACACTGCTAATTCTACCATTAAATCATGTCCCTAAGGACCACTTCTGCGTATCTTTTAAATACCTCCAGCACGATGGGTCAACAGCAGAAACTTTCATTAAATCACAAATCTTCACAGTTCCACAAAGCTCTGTAGCATGTATTTTATCAGAATAGGATAGTTCCATTACCGTGGGACACATTGTGATGGTTATTTCTAAGAATAAAAAGACAATAAAGTGAATTTCTCACTTTTCTGTGCTATCTGTATTCCTTTGCAGTGCTCAGGCCCAGTAAATCCTTAGACCTGCACATGTTTTACAGTGCATTCAAGCCACACAACCCAGCCAACAGAGAGGTGATATTTCTGTATAACGTTCATAAAGGGCCTTCACTGTTTTGCAG
Seq C2 exon
CTATTGGTCCAACCCTCGAAGACATAAAGCAAAGACTTGGAGCCACTGATGGAAAGAAGAACACACTACAAATTGATCTTGTTACTCTTCAAAATAATCTCAATGGGATAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056:ENSGALT00000024287:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.175
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGAAGAGAGAAGACCTATCAGG
R:
ACAAGATCAATTTGTAGTGTGTTCT
Band lengths:
182-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]