MmuINT0089483 @ mm9
Intron Retention
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12688015-12690457:+
Coord C1 exon
chr18:12688015-12688117
Coord A exon
chr18:12688118-12690343
Coord C2 exon
chr18:12690344-12690457
Length
2226 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TCTCTCCCTTCCTTTAGAAGTCA
3' ss Score
4.32
Exon sequences
Seq C1 exon
ACAGTGATAAAGGAAGACCTTCCAAAAAGAGCTAAGACCCTGAGTTCTGACAGCGAGGAACTGTTAAATGAAGCCAAGATGACACAGAAAAGGCTACAGCAAG
Seq A exon
GTATTAAGAGGGGCAGATGGCAGGGACATTCAGGGGCTTTAATCAACCTATGGACACGTGATCCAATGCAAAAGTGGGTTTTGAGATCCACTGTCAATGCATTCACCCAGTATTCTAACGAGCCCTATCAACCATGCTTGAATGTAACACAGCCCCTACACAGATGAAGTCTGGGGAGTGATAGCCTTCCTTGGCCTGACTTGGGAGTACACTGTGATCATGGCAGTGGGAAGCCACATACCAAGGTCATTTACTCCAGATCATTTCAGCAACTGCTTCAAGGCATCTTAGATCCTAAAATCTTAGCAACTGAAATTACCAAGAAATAATCGCTGCTAGTGTAAGACCCCCGAAGCTGGGCCTCCGCTCAAGTCCCAAGATGAGCTGGCCAGCACCCCAGTGACCCGAGAGAAAACCACACCTGATGCAAACTGCAAGAGGTTTTATTATCAGCTAGCTGAGGATGAAGTCCCTCTGCCTTGCAGGGCAGGGGAGTTTGACCCCTAGGGGGCTTTTAACAGCTAGCTGAGGAATTGGGAGGAGTTGGGAGGAGTTGGGAAGAGAGTTCTTCTCTTGGTGAAATTTACAAGGCAGGAGTGGGGAGTGAGTTCTTTCTGAATTTTTATCTCCGTGTCCTCGGCACAGGAAGGCAGGCATCTCCGGTTGTAAAGTATAAAAACAAAAAGGCTTTTAGCTGGCTATAGAGAACAAAGAGCTTCTTTCTGGCTGTATTTTTAGAGATCAGGGAAAACAATCTTGGGGAACGTCCAGGGCCTTTACCTTCTAGGGAGAAATGCTCTAAGTCGAGGTCTCACACTAGCATGAGGCATGAGAACACTTTAAGCATCAATTTTACCTTTGATAATGTTTCATCTTATATACTTTATAAGAAAGAATTAAATTGCCTTAACATGGAGGTACAGCTCATGGGGCAGAAGCTTTGAGACACAGGGATAGAAGCCATTGGAAACTCTGGAAGCCCCGAGCTTTGAAAATGCTGCCTCTTGAATTTTTATGGCCTCTCCCAGGAAGCCACAGCCAGCCAGGCATCTGGACTCAGTCTTTGGTCAATTTCTCAGTCCCTTGTGAAGGATTTATACATTTTTTTAACTACATGTTTTTGAATATCAAATGCATAAGAAGTAAAACCCAGAAAAAGTATATTCTAACATGCAATCATTAATCAACATTAAGATTTTATCAAGTTATGTCTGCCTTCTTTACTGTTGGGTTGGTATGGGGCTTTTGCTGTTGTTTGCTTATATATTTGGGTTTTTTTTTTTTTGTGGTGCTGTGAATCGAACTCGGGTCCTCGAGCATACCAAGCGTGTCCCCCTACTAATCCTCCTGTCTCTGCCTCTTCAGTGCTGGGTGACAGATGCAGCTGTGTCTATGATGAGTGTTTTAAGAGTATTGACTGTGTTGTTAACTAAAGTAGTCAGGAATCCTAAGGAGGCCTGCGTGCCCAGCGTGGCGTGGCTGGTGGCTTTCCACATCCCTGAGGTGGCTGCAGGAGGAGCTGGGATGTGGACTGGAACCATTTTGTTTACCACTTTATTTTTAATGTGTCCCTTTGAGCATCTCTGGTGAGAACCCAAGGACAGGGGCATTCATTGTTCTGCAGGAGCAGAAACAAACATCCACTCCCAAGAACAGTCCTGTCTTGACTGCAAGTTACCCCTTAACAGTCCTGTCTTGGCTATAGGTTGCCCCTTTTGTATCATTCATTTGCTCATTCAAGCATTTATTCATGGAACAAGTGTGCCCCAATACTAAGTCCCAAGCAGTGCCAGCCAAACCCTGCATGTTGGGACACAGCAGTTAACAAGGCAGACACTCTTTCAGTAAGCTTTGACTTGGTCAGAATGAAAGTCCAGCTGTCCCCTGATTTATTTTGCATCTCCCCTTCTTTGTGTGTCCCTTCATGAAGCCAGTCACCACAAGGCTCTGGTAAGCTGCTCTTTCAGCCATTATGACCAGAGATGCCCATGTCTGAGGGCCTAAGTACTGCAACAGCATCTGTGGGGTAGGGACCAAGGTACATGCATACTCAATGGTCTGCAGACACTGCCCACTTCAGAGGCCACAAATGCCCATGGAAGATACAAACGCATGAAGTAATTGCTTCTTGGTGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTCCCTTTCTCTCTCTCTCTCCCTTCCTTTAGAAG
Seq C2 exon
TCAGTCCAGCTCTCAACAGCCTACAACAAACCCTGAAGACTGTATCAGTTCAGAAGGACCTGCTAGATGCCAACCTCACTGTTGCCCGTGATGATCTTCATGGGATACAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-Lama3:NM_010680:52
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: