BtaINT0084228 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003061 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr13:55425919-55426737:+
Coord C1 exon
chr13:55425919-55426021
Coord A exon
chr13:55426022-55426626
Coord C2 exon
chr13:55426627-55426737
Length
605 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TGAAGCCGTCTTTCCCACAGCGC
3' ss Score
8.74
Exon sequences
Seq C1 exon
ATGGTGGTGCAGCGGGGCCTGGCACCCCGGGCCCGGGAGCTGCTGGCTAACAGCAGTGCCCTGGAGGAGGCCATCCTGGGGGAGCAGCGGAGACTGGACCTTG
Seq A exon
GTGAGTGTCATGTCCCAAGGGGCATCCCGGCTCTGTGGGACTCTTGCCCTCCAGCTCTGTTGTGTGGGGGTTCATGGATTGTCACTGTGAGAGTCAGGATGGCAGCTGCCATGGGTGTGAATTTTCCCCACCGCCCCGGCAAGTCCACTCCTGGAGCCCTGCAGAGGCCTGCCCACCCTGACTTTGTGACAGGACCCCAGGACATGGGAGGGCCTGGGGAGAGGACACGAGAACCAGCTGATGGTTCTGCTGTCCTGGCTGAGGGTCATGTGTGTGCCAGGCCATGGGCTAGGTGGGGGTGTGTGTATGCACCCTCTGCTGTGAACACCTCAGGGTGTTGGTGGCCATGCGCAGCGGCTTAGCTTTTCTGAGTCTCCATTGTTTCACCTATAAAATGGGACGGTTGCATTTGCTGTGGGCCTAGGAGGCTGCTCTGAGATTTGGGGTGCAGTGCTTTCCCCCAAGCCGATGGCCCTTGTGTCCAGGTGTCTCCCTCTGACTGTGTGTGTGTGAGCCTTAGCACTCCCTGGTCAGGAGGACTCAAGTGGCTGTGCCTGTACTGTGTGGGCGGGGGCTCCTCAGGATTGAAGCCGTCTTTCCCACAG
Seq C2 exon
CGCGGGCCACCCTCCAGAACACTGGGACCCAGCTCCGCGATGCCCGGGCCAGGAAGGAGCAGCTGGCGGCCCGTGTCCGGGAGGTGCAAGCCCTGCTGGCTATGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003061:ENSBTAT00000003981:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development