RnoINT0084045 @ rn6
Intron Retention
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175559042-175559547:-
Coord C1 exon
chr3:175559445-175559547
Coord A exon
chr3:175559153-175559444
Coord C2 exon
chr3:175559042-175559152
Length
292 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
AGGCTGCCTCCTCTCTGCAGCTC
3' ss Score
9.06
Exon sequences
Seq C1 exon
ATGGTGGTGCAACGGGGCCTAGCAGCTGGAGCCCGGCAGCTGTTAGCCAACAGCAGTGCCTTGGTGGAGACCATCTTGGGGCACCAGGAGAGGCTGGGCCTTG
Seq A exon
GTGAGTATCTGTGACATCTGGGACATGTCCTTGTAGCTTCAGGATGGTTCTAGTGCGGTTTGGTGTGAGAATCAATAGGTCCTAAATGTGCCTGCCCTGGGTGGCTTCTACGCCATGGGGTCTACTCTGTGGGCGGGAGTTGGGGTGTAATGTCTGCCTGACTTGGGTGGTGTGCACACAGGTGGAGGAGGATGGATGAAGCTCAAGGCCTCTGTCTTTGTTCTCACTCCATCTATGGGCCAGGAGGGTTTGGGTGGAACTCCTTGCCACTGAGGCTGCCTCCTCTCTGCAG
Seq C2 exon
CTCATGGCCGCCTGCAGGCCGCGGGGACCCAGCTTCGCGATGTCCGTGCCAAGAAGAACCAGCTGGCCGCCCAGATCCAGGAGGCACAAGCCATGCTGGCCATGGACACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691:ENSRNOT00000081226:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCAACGGGGCCTAG
R:
TTGTGTCCATGGCCAGCATG
Band lengths:
210-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]