GgaINT0011809 @ galGal3
Intron Retention
Gene
ENSGALG00000005321 | LAMA5
Description
NA
Coordinates
chr20:7819612-7819921:-
Coord C1 exon
chr20:7819819-7819921
Coord A exon
chr20:7819726-7819818
Coord C2 exon
chr20:7819612-7819725
Length
93 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
TGTTTTGTTTTTAATTGCAGCTA
3' ss Score
9.4
Exon sequences
Seq C1 exon
AATGTCATGTCAGAAAATCTCGGGGCCATCTCTAAAGAGCTGAAGAGGAACAGCAGCAACCTTGAGGAGGCTGTGAGGAGAGAGCAGACAAAACTCAATGGGG
Seq A exon
GTGAGAGGAGCTCCATCACAGGGTGGTGGCTTTGGGCTGGACAGAGACCCAACACGCAGAATACCTGTTGTTTTGTTTTGTTTTTAATTGCAG
Seq C2 exon
CTATTAAAGGCACTCTGCAGACAGCAAAGAACAAGCTGGCTGACCTCCGCAGGAAGAAAGAGCAGCTCTTGAGCCAGCTGCAGTCTGTGCAGGATATGCTGGGCAGGGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321:ENSGALT00000008535:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=NA C2=0.487
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCAGCAACCTTGAGGAG
R:
TTGGTCCCTGCCCAGCATATC
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]