BtaINT0084273 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011412 | LAMB1
Description
laminin subunit beta-1 precursor [Source:RefSeq peptide;Acc:NP_001193448]
Coordinates
chr4:49272124-49275144:-
Coord C1 exon
chr4:49274881-49275144
Coord A exon
chr4:49272328-49274880
Coord C2 exon
chr4:49272124-49272327
Length
2553 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
GTTCCTTGGCTTTGTTGCAGACG
3' ss Score
7.62
Exon sequences
Seq C1 exon
GCAATTTCATCTCATGCTCTAGGAGCCTTGGACAGCATTACCAAGTATTTCCAGATGTCTCTAGAGGCTGAGGAGCGTGTGAATGCCTCCACCACAAGTTCCAACAGCACGGTGGAGGAGTCGGCCCTCACTAGAGACAGGGTGGAAGATTTTATATTGGAGCGAGAGTCGCAGTTCAGAGAGAAACAGGAGGAGCAGGCCCGCCTTCTGGATGAACTGGCAGGCAAACTACAAAGTCTTGACCTTTCAGCTGCTGCCGAAATG
Seq A exon
GTAAGGTTTGAGTTTGGCCCCCAGGCTGCCATGCTACAAGAGAAAAAATACCCTGCTTTGTCTTTAACACTGTCCACTTTGCAGATGAGTCAGCGGGAGGGAAACCGGTCTGGGGTTTCTGTGACCAAGCCAGATTAAAAACAGCAGCATGTGAGTTTCCGCCTTCCTCTCGCAGCAATTTCTCTGTGGTACAACCAAAGAATCAGGACTACTCTCCCATGCTGCTGAATTGACTCACTTCTTATCTAAATGGGATTCTTTTTATACTGTGGACATTTTTTTTAAAACTTTGTTCTGACTTGAAGTGCAAATTGCATCCCAGTGAAACAATTCAGAATCATTCTCAGAGAGACTGCCTAAAAAAAAATAAAGGAAGCTAAAGAATTTTTTTTAATGGATAGGTTATTAGTTAAAATGTTCCTTTGTCCTAGTAACTTTACATAGTTAAGATTAACCTGAGACCAGCCTAGAAAGTAAATTTACTTCCCAGAAGCTTTTAAAAAAATAACTCTGGAGTGAAATGAAATTGAGTGACGAGTTTAATGGAAATCAGGCAGAAAGCAAAAAAAAAAAAAAAATCCAAACTAGGTTTTTCTTCCTCTTGCTCCCTTACTATTTTTCATAGAAGAATACTTATCTGAGAGAAGCTGCAGGGTGTTGTTTATAACCTTTATAAGGCTTCTGCTCTCTTGGCTTTAGAAGTAGAGGATCAGTACAAGAAGGGGTAAAGTGAATTCATGGGAGGCTGGGAGTTCAGACTTCATTACAATTTTGTCTTGGTGACAGTCTTCCGTTCCTGAAACAGACAAAAACACTGTGCTGTATTATGACAAAGTTAATTGATGCCTACAAGATTATGTTTTCATTACCTTAGGAAACTTGATAGCATCTAATGGAAAGGTAAGAGATCTCTTACCATTTGTTTAATACAGAAACAGAGGCGTAGAGAAATATGTATTCGCACCTAACATGAGACAAAGCTGCCATATGCAGGCATGAAACGCCAATTCTCTCAGTCTTTCTTCAATAGTGACTCCTTCCTTATAAATTCTAATTAAAACTCGTCATCACAAGTTTCTCCAAACTAAAATGAAAAGCAGCTAAGGATGCTAGAGTATGTCTGCTTTGCAGCAGGGGGCATCTTGGGAATAGGTGGCCTGTGGGCAGCTTCCTCCAGCTATTAAGAACGGGAGCCCTGCCTGTGCCTGCTTTCCATCAGTTGAGTGGCCTAGAAACTTGCCACCTTCTTCCCATCTCTCATTGTATGTGCCTGTTAATAATCTTGTGAGAACTCCCTTTTTAGGTTCCACACCACCACTTTTTGTGTAGAAAGATTTTTGCTCCTTTGTGTTTTTCCAGGACCTTCGGTTCTGTCTTTGTGTATATTTAGTTAGACTGATGATGTTTTCTTCCAGGCCTGCCAGGCTGATGAAATAAAACAGATCTCCTAGGGTGTTAGAATGTTTTTAGAAAGTATCCCTGAGGTCTTAAGCCTTCTTGATTAAGGCTTGTGTTCTTGTATAGCATGCAGAATAAACTTTATTTTCTGAAGATTTTTATGTGCTATAAACCAGATACATGAAAGAGTATTATTTTAAGAGATAATAAGATAATTATCACAGAACTATTAAGTTATTGAGTAGACTGTATTTTGAAAAAACTACTCTTCTTAAAAGAAGTACCAGCATGCTTTGTTTGGGAGTATTCTGTTAACTATTTTTCACTGTAGTATAGCTTTTCCCTCTTTTCAACATGAGCATTTTCCACAAAATAGCTCTAAACACAGTTTGTCTTCCTGCTCAGCCTTTTCCGTCATATAGCAAACCTGTAGTTTATCGATTTGCCATATATATTCTACAACCAAGCCTTTGGAAGTTTCTGGCAGGTGAGAGAGGAGGAGTCTGGCAGGGGCTTTGGGGGTTATTTGGAAAAATTGTACCCACCTTTATTTTCTCTCTTCCTCTCCCATGTGGAATGTTCCCCACTTCTGCTAAAAATCTAACCAACCCACTCTCCTTCCCCAGCTACAATCCTCAGTAATCTCCATCTGCTTTCTTTCTTACTTGATCTGACCTATTTTTGGCCTTTTTCCCTAGAGTTAACGTGTCTTCCTAACTAGACATAAAGTTACTAAAAGGCCTGATTATGGGTCTTTTATATCACCCTTTTTACCAGAACAGTTAACAGGCTACTAGGTCCGTTCTCGATACCATTTTTTCTTTCGGTAAATTCAACCAGTTAGGAGACCTTTCAAAGGATGCATTCTTTGGCTTTCATATCAGCAGACTTCAACTGGATGGAGCAGAGCCCCTACGTATGGTATTAGGGCAGAAGGTACTGAAAGCACTGATGCAGGGTTAAATCACTATTGCCTTGGAAGGAAGCAAGCTGGCTTACCCCTAAGCTCTTTGCTCCTCTCTATCCTGAACACTTTTCCAAGCACCCTTGCCGAGGACCACCTACACACTCTCTTGGGCCACCCAGGCCCTGCACAGCTGTTGGCTACCTTGGACTCACTCTGCACCCCGTGCTTGTTCCTTGGCTTTGTTGCAG
Seq C2 exon
ACGTGTGGAACGCCTCCAGGGGCCTCCTGTTCCGAGACGGAATGTGGCGGCCCAAACTGCAGAACCGACGAAGGAGAAAAAAAGTGTGGTGGGCCTGGCTGTGGTGGGCTGGTCACTGTTGCACACAGCGCCTGGCAGAAAGCCATGGACTTTGACCGAGATGTCCTGAGTGCCCTGGCTGAGGTGGAGCAGCTCTCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011412:ENSBTAT00000015166:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]