MmuINT0089643 @ mm9
Intron Retention
Gene
ENSMUSG00000002900 | Lamb1
Description
laminin B1 [Source:MGI Symbol;Acc:MGI:96743]
Coordinates
chr12:32005763-32008530:+
Coord C1 exon
chr12:32005763-32006004
Coord A exon
chr12:32006005-32008326
Coord C2 exon
chr12:32008327-32008530
Length
2322 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CAACCCTTGGCTTATTTCAGACC
3' ss Score
6.06
Exon sequences
Seq C1 exon
GCGCCTTGGATAGCATCACCAAGTATTTCCAGATGTCTCTTGAGGCAGAGAAGCGGGTGAATGCCTCCACCACAGACCCCAACAGCACTGTGGAGCAGTCTGCCCTCACGCGAGACAGAGTAGAAGATCTGATGTTGGAGCGAGAGTCTCCGTTCAAGGAGCAGCAGGAGGAACAGGCACGCCTCCTGGACGAACTGGCCGGCAAACTGCAAAGTCTCGACCTGTCGGCTGTTGCACAGATG
Seq A exon
GTGAGGCTTGGCGTTTGCTCTCATTAGCTCTGGGTTTTTTGTTTGTTTTTTGTTTTTATAAAGAGACAAAGAAAACAGACACCTTCTGCCTTGCTCCAGTATTGCTGTTCGTAATCCTGTAGGGGTGACTCCTGAGCTCAAGGTGCTGGGCTCCACTGTCAGTTAGCCGTGATCAAGGCATGGGGAACAGAGCATGTGTGTGTCTCCCTGCCTGCTCCTGCCTCAACTGTTCCTCTGGGCAGCCCCTCCCCCACCTCCTGTATCTGCTGAGGGACTTGACTTCTGAAACTAGATCCTTTTTATAGTGTGGCCTTCAAAACAAAACAAAAACAAACAAAACAACAACAAAAAAAAAAAACAAGAAAAAACCTTGCTTGTTTTGCTTTGAACTGCAACATCCAAGTGGAAGAATTTAAAATTGTTCAGGGACAGAACCTTTTTCCATCGGTGTTTGCTAAAATGTTCCTTTGTTCCAGTAATATTACCTGGTAAAGCTTAAGGTCTGAGCTGGCCTCAAAGAGCAGATTAATTTCTTAGAAGCTTTTAAAAAGTAACTCTGGAGCCAGGTGAAATTGAGTAGTGAGTTTAATGAAAACCAGGCAGAAGGCCAAAAGGAAACCAAGCCAGGTTTCCCTGTGGTTTTCCTCTTCTTTTTCATGGGAGGAAACCTGAGACAACTGAGATATATTTTTATATATACACCAACATTATCTTCTAGTTTTTCTCAGCCTAGACAGAGGAATCTTTAAGAGTCAGGTGGGAAGAAAACTGGCAAAGACACTCATTTTATGGCCCTGGGCCCTAGGTACCTTGGATAGTAGCACCAAGTATTTTCAGGTCTCTCTCAAGACATAAGAGGGTGACTGCCTCCACTGTAGACCCCAGCAGCACCGGAGAGCAGCAGTCCCCACTCCTGTAGCAGCCATGTGTACTGGAGACAGGAAAACCCTTAACCATTCTGTACCTGCCATCGCCCCTCTTGCCCACGTCTGCAGTCAGAAACAGACAAGCGTGTCACCCATCCTGAACTGTGGTCAGTTTTTTTGGACACCTGCAAAGTTTAGGGGTTGGTATTATCTTCTGCTTTCAACAGAGTGGATCTTAAAGAGTGGGTGGAAATGGGTGTGGAGTGGCGGCACCCTCTCTGTGCAGGCTTTTTTTGTAAGACGTGGCTTAATGGTTTTTTTTTTCTCACTGTTTTTGTTTCAGTTATCCTGTGATTATTTCTGTAGGTTCTCAGCTGCCATCTTCTTGTGAATTGACTTTTTCCTCTTTGTGTTCCTCAGTACTTCCTGATCTTCACTGAGGAAAGCTCAGCTGTGCTGGCTCTCTGTCCTTGTTCATGTTTGTTGAAACAGAGCACATCCAGTGTGCTTGCCAGAGAGCTCGTAGAAAGCACTCCTAAGACTTTTAAGTTCGCATCTTGAGTGGGCTCTTTTTCTGCCGTAACACATAGAAGACAATTATTCCAACATGCTTATGGGCTGTAAACCATTATTGTGGCTATTAACATATTTGGGATTATAGGTACTTTACAAACATTTGAGCCAAAAGAGTTCACAGCATCTCTACTAAAAATACCGTCTTTAAAATGATACTTTTATGTTGGGGGTAGTCTGGTAACTGCTTTCCATTGCAGTACATCCTGCTTGTCTCAGTACAGTTTTCATAAAGTGCTAAGTATAACTTAGTTCCTGCACAACTCTTTCCGTATCACACAGAATGCCTGTAATTTCCCTGTTTGCATCTGTATTTCATAGTCATGTGCTATGATCTTTAGGAAGTTTCTGCTAAGGAAAAAGGACTGAGTGCTCACTAGCTGGATGGGGTGGTTGAGGGAACTTGAGATCTATTCCCCTGTGTTCACGCAAACTGTTCTTTCCCATCTGAAGTGTTCTAGCACTTTCCCTACTCAAATCCTACCCTCCAGCTTCCCTGTCTGTATTAAGTTCTCAGCTTTTCTCAATACACCTCCCCGACCGATGATGCAAGCTATGTCCAGGTTACATGCCAGATAGCAGGCCAAAATCACCAGAGTACTTGTTGCTGAGTCTAAACCAGCCAGGACGCTGAATTGGCAGAACTTGAGAAAGATCTGAGTTTGGGTAGATGGTATTGGAGATTAAAGTTCAGTGGGGGCGAGCTGGGTGGTTCACGCATCTCTGCACACTCTCTATTCCTGTTCATGTTTGTTGAAACAAAGCAGATCTAGTGTGCTGTACACTTTTTATGTGTCCTGTCCACCTTTGTCCTCTGGGCCACCCAGCCATTCTGTTGCTGACTTACCCGGAACCCCCGTTCCCAACCCTTGGCTTATTTCAG
Seq C2 exon
ACCTGTGGAACACCTCCAGGGGCTGACTGTTCTGAAAGTGAATGTGGTGGCCCCAACTGCAGAACTGACGAAGGAGAGAAGAAGTGTGGGGGGCCTGGCTGTGGTGGTCTGGTCACTGTGGCCCACAGTGCTTGGCAGAAAGCCATGGATTTTGACCGTGATGTCCTGAGTGCCCTGGCTGAAGTCGAACAGCTCTCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002900-Lamb1:NM_008482:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.580 A=NA C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: