BtaINT0084740 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017395 | LASS5
Description
Bos taurus ceramide synthase 5 (CERS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001102132]
Coordinates
chr5:29926101-29927957:+
Coord C1 exon
chr5:29926101-29926158
Coord A exon
chr5:29926159-29927906
Coord C2 exon
chr5:29927907-29927957
Length
1748 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GATTATTTGTTTTCTCTTAGTCA
3' ss Score
6.48
Exon sequences
Seq C1 exon
GTGGAGATTCACTTTTTATTTATGTATATTCTGCTACGGAATTAGATTTCTCTGGTCG
Seq A exon
GTGAGTCTGAACTTTCTCTGGTTCTCTGTTGGGGTCTAATCATTCATGCATCCCTAGAGATAAGAGTTAAATACCTTTAGAGCTTTGTCCTCTACTCTCTTTTGTTTTTTCTTTTTTTTTTGTTTTTTCTTTGTGATGCCTAGAGCCCAGGTTTATAAGCTAAATAAATTGTCTTCTGTCTGGGGCCTGACATCAGTAACCTCATGACAGTTTCTCCTTAAATAATGCTAATAATAATAGTATTAATTAAATTGACATAGTACATGATGGTTTACAAGGCATTTGACAAAAGTCCTGTTCTTGCAAGGAGGAGACAGTTAAAGAAATGACATCAGTAACTCATTGAAGTAGGTATTATTCCTGCTTTGCAATTGATTATCAGAGTCAAAGAAGAATTTCAGGCTTTTTGATTCATGAGTCTTTTTTTTTCTTTCCTACTGTACCACAGTATTTTCCTCTAAATGCATAATTAAAGTTTCAAAATACGTGAAACATAAGGAAGCAGAACTGAAGGAAGGGAATAGACAATTACACAATCATATTTGGAGATTTTAACGCTCTTAATGATTGATTAAATCACTAGACAAAAAATTATCACTGAGCATGTAGAAGGTTTAAATAACAGTCCAACCAGTTTGGCCTAATTGACATTTATAGGACACCACACCAGTAGCTGAAGGATATATATTATTTTCAAGTCCATGTAAAGGATCCATTAAGATAGACCATATGCTAAGCCATAAAATTAGTCTCAGCAAATTTTAAAATTTTGAAATCTTATAAAATATGTTCTCTGACCATAATGGAATTAAAACAGGAATCAAATCAATAATAATAAGATGTCTAGAAAATATTTGTAAGTTAAACAACTCTTCTGAATAACCCAAAGAGCAAATAAGAAATCACAAGGGAATTAGAAAATACTTTTAATTGAATGATGCTGAAAATACAGCATACCAAAGTTTGTGGTATGCAGCTAAAGAATACTTTTGAGGAAATTTATAACTTTAATTTGTTTATATTAGAAAAGAAGAAAACTTTAAAATCAATGATTAAGTTTTCACTTTAAGATCCAGAAAAAGAAGAGCAAAGTAAACCCAAAGTAAGTTAAAAGAAAGGAAAAAAAGAAGAGCAAAAATTGATGAAATAGGTATTAGAAAATAATAGAGAAAATTACAAAGGTTGGTTCTTTGAAAGTTTTAATTAAAATTGATAAACCTTTAGAAAAAAACAAGAAAACAAATTATCAGTATCAGGGAGAAAAAGAGGCTATCACTATAGGTCCTGTAGACATTGAAAGAATAGTAAGACCACATTATGAACAGTTTAATAGTAATAAATTCAACAACTTAGATCAAATGGACAACCCTCTTAAAGGACATAATTGAAACTCCATTGGAGATGATTGCTTTTGACTTTTGAATCTTTGGCACAGAGAGATCTCCTTTGATTATTAAATGAAATCACTGTCTTCCTGCCTCCCAATTTCCTATATATTCCAGGTTGTGATGTTTCCAAAAGCTATCCTAGCACTCTCTTTGCTCTTGTGTACAGTTTCTCTCATCTTAATAGCACTTTCTTGTTCTAGCAAAAAAGTATAATTGTTTATTTAGCCTTTAAGGATCCCTAAATTCTGTCTAGGGGGCTTCCATTTTCTTTCCCATCTCTTTGCCCAAAGTATAGAGAAAGAGGTAGATGGGCCAGGAGGGAATTCTGAAAACTGACTTGGATTATTTGTTTTCTCTTAG
Seq C2 exon
TCACCTTGGTTCTGGGACACCCGACAGTGCTGGCACAGTTACCCTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017395:ENSBTAT00000029121:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]