GgaINT0000976 @ galGal3
Intron Retention
Gene
ENSGALG00000006184 | CERS5
Description
NA
Coordinates
chrE22C19W28_E50C23:253902-254592:+
Coord C1 exon
chrE22C19W28_E50C23:253902-253959
Coord A exon
chrE22C19W28_E50C23:253960-254541
Coord C2 exon
chrE22C19W28_E50C23:254542-254592
Length
582 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
AACTTGACTTTTCCCTCCAGGCA
3' ss Score
9.1
Exon sequences
Seq C1 exon
GTGGAGATTTACGTTCTATTTAAGTATATTTCTTTATGGAATCAGGTTTCTCTGGACG
Seq A exon
GTGAGTTGATCTGGCACATCCCTCTGCACCCTCCCACCTGGTTTTTCTGTGTGTTGTGCCACTGAGTTAGCACTGCAGTGCTGAAATTTCAGGGCTTTGACTACAGTGACCCTTCTGTTCTCCCACCTAGCTTCAAACGAGGGGAATTTAGTGATAGTCACCTCCATGTACCCTTATTTGAGATCCTGGAGTTTTTATTTAAAGGCCACTTTGACAGTATGAGAAAGTTTCTAAACAAATCCGTCATTATGGAAATGCTAAAAGTTTGTTTGTTCTTTTACACCAGAATAGGACAGACCTGCTTTCTTGGTGTGGAGAGGTTTTGTTTTCTTCCCATAGGAATACGCATTTATCTCTGAGTCTTTATTATTAGAGCTGCCTACTTATTCTTTGAATTTCTGCTGCATTACAGTTTGCCTTTGGGTGCAGAATGATTATTTCAAATCATTATTATGTCTTACAGTAAATTTAGCTTGGAACAAAGGTAAAATTTCAGTGAACTGTTCAGTGTATTCGTTGATGCCTTAGATAATAGGGAATTAAAAAGACCAGCAGAATAATAAACTTGACTTTTCCCTCCAG
Seq C2 exon
GCACCCTGGTTTTGGGACACACGACAGTGCTGGTACAGCTACCCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184:ENSGALT00000009980:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]