BtaINT0086279 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020895 | LOXL4
Description
Bos taurus lysyl oxidase-like 4 (LOXL4), mRNA. [Source:RefSeq mRNA;Acc:NM_174384]
Coordinates
chr26:19207582-19210585:-
Coord C1 exon
chr26:19210423-19210585
Coord A exon
chr26:19207826-19210422
Coord C2 exon
chr26:19207582-19207825
Length
2597 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GGTGTCTCCACGGTGCCCAGGTG
3' ss Score
3.82
Exon sequences
Seq C1 exon
GACACCTGGTACTGGCAGGGGACGCCGGGAGCCAGAGAAGTGGTCATGAGCGGGGTGCATTGCTCAGGCACAGAGCTGGCCCTGCAGCAGTGTCAGAGGCACGGGCCAGTGCACTGCTCCCACGGCACGGGGCGCTTCTCAGCCGGAGTCTCCTGCACAGACA
Seq A exon
GTGAGTCACGGGAGGGCCCGTGGATGGGTGGATGTGGCTTCTCTGGGTTGCCAAGCCTGCAACTCCCATCCCGTCTCAGGGAGGGCCCTGAGAGCTGGTTCCAGCTCCAAGGCCCCAGGGTTGGGAGTGGAGGGAGGGCTGGATGTGGAGCACCAGCTCTGTCATTGCCACGTGTGGCCAGGTCACCTGCCACGTGGGGAAACAAGCTGTGCCCCGCTCATGGAGTTAATGTAAGAATTAAGACAGTACCTGCAATGTGAGGATACACAACGGTGTTTTTCAGTGTTTGTGTCATGACCAAACAACAGCAACAACATGTTACATTTAGTAAGGATAGTATTTTTCTCTTGATATTATGTCTGTGTGTCACAACCTAGGGCTTCCCAGGTGGCTCAGTGGTAAAGAATCCACCTGCCAGTACAGTGGGAGACTCGAGTCCAGTCCCTGGGTCAGGAAGATCCAGCAAGGATCTTTCTTCCTAGAGAAGGGCATGGCAACTCACCGCAGTATTTTTGCCTGGGAAATCTCATGGACAGAGGAGCCTGGCGGGCTACAGTCCAGGGGTTTCAAAGAGTCAGATGCAACTGAGCGACTAAGCATGCATGCACATCACAACATAAAATATTAACATATTTCTTACTGTAGTTTGTAGTAAGAAAAGAATTTGAAAGCTGTTGTAGAGAGTATAGAAATGTGAGGACACATGGGCCTTACAATGAGCTGTGGGATTTACCCAAAAGGCTTTATTTTAGGTCAAGACCATTTTGAGGCATCCATCTACCCACACCCCCAGATTCTTATGGTAGCAGCCTTTGTGTGACATATGCCAACCAGGTCTGGGCCAAGAACTCTATCCAGTCCAGAGGCTGCAGGCTGCCACCAACCCAAGTGGCCGCATGACCTTCTTCCCAGCCAGGCTGCAATGCCAAGACATCCTTCAGCTCTGTCAGCAAGCTTAGGGCTTTCACTCTGATCAGCGCCCATTGGAAGAGCACCAGCCTTTACAGCCCATCCTCCCCTGCAGGGTGATGGGGTTTCCAAGTGGGCCTCCAGCCACAGCTCCCAGCATACTGGGGGCCGGCTCCCCCCTCTCTCCTCTCCTGGGACCCTGTGCCCCTCGATGGAGGGGCAGCTTTCCTTCTGAATTCACTTGATACTTCACAACGGCTGAGCACAAGCAGCCAATGCACCATCCCTGTGGTCGTCCCCATCTCTCCTCTGTGATTTTTCTCATTTCTTTCTTGCCTTTACCGTCTCTTCTTCTCTCTGAAAGCACTCCTTTCCCTCAGAAATTCTAGGGTGTGCCCATGGGCATACCCTTGTCCGTCTCCAAAATATACCTCAGGCATTCCAAGAGCATTTAGTGATAGTGCAGACATCATCCAGCAAACCAGCTCCCACCCTGATGCCCATTCACTGAAAATAAACCCGTGTTCCCGTCTCACCATTGTCAGCGATGGCTCTGCCCCAAATCTAAACTGTAACCCAGTTTTTGCATGAACGAGCATTGAGAATTGGCAGTTTTCTCTCTTGATGGTACAAGGCAAAAGCTGTGGATCTCCACATTTCTGCACTCACACACAAGGGACCGCGGTGACGGCACAGTGGCTTCCCTGTGACCGGAAGGGAACTGGAGAGGCTCTGAGCAGCCTGTGGAGATGCAGGCTCCAGCACGGTGGACTCCATGCACCAGGGCATGCAGTGTCCCGGTGTGAACACCCACGGTGGCCATCAGAGTAGAAGAGGAGCCCTGGAGGAAGTACAGTCTCAGAAAATGTAGTAGAATGGCCCAGAACACCAGAGCCCAGGAGCAGGTTCAGAGATGAACTCTTGCAATCTCCAGCCCTCTCCCTCTCACACTGCAAGAACTGAGGCTCAGAAAAAGAACTGAGGTGACAAGCCTGGCATCCGCAGAGCTTCTGAGAGGTTATATGAGCCAGGCTTATAGGCAAAGGTATACTCTACAAAAGTAATGCTGGCTTCCATCACTGTGTGCTTGCCACGGCCACACCATGATCTCAGCACGTTACAGGTACTATCACACTCATATTATTCATTATTTGCATCTTACACATGCGGAAAATGATAGACGAAAGGATAAGCAATTCCCCTTAGTGGTGCAGACAGAAATTAAGCCAAGACAGGAACCCAGGTAGTCTAGCTATGAAGCCAGCAAGCTCCACTGTGACACTAGCAGCCTCCCAGCTTAACGTGATAGATCTCTCCTGTTAGGAGAACTCACATCTCCTGACTCCTAATGCGTGCTGCGTGCTAAGTCGCTTCAGTTGTACCCAACTCTTCGCGACCCCATGAACTGTAGCCCACCAGGCTTCTCTGTCTGTGAAATTTCCCAGGCAAGAATACCAACATAGGTTGCCATTCCCTTCTCCAGGGGATCTACCCAGGGATCAAACCCAGGTCTTCTGCATTGCAGACAGACACTTTACCGTCTGAGTCACCAGGGAAATCTTCTGACTCCTAAACCGCCCTACTCTCCTGGTTCCTCCAAAAGCACTCAATCTGGAGGCAAGCCTGTCCCCTAGGCCGGAGAGCAAAACCGGCTACCTCCCTCACCTTGGTGTCTCCACGGTGCCCAG
Seq C2 exon
GTGCCCCAGACCTCGTGATGAACGCCCAGCTGGTACAGGAGACGGCGTACCTGGAGGACCGCCCGCTCAGCCTGCTGTACTGCGCCCACGAAGAGAACTGCCTGTCTCAGTCCGCTGACCGCATGGACTGGCCCTACGGACACCGGCGTCTGCTGCGCTTCTCCTCACAGATCCACAACCTGGGCCGGGCCGACTTCCGTCCCAAGATGGGGCGCCACGGCTGGATTTGGCACCAGTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020895:ENSBTAT00000027838:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(49.1=94.5)
A:
NA
C2:
PF0118612=Lysyl_oxidase=PU(38.7=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]