RnoINT0086074 @ rn6
Intron Retention
Gene
ENSRNOG00000015727 | Loxl4
Description
lysyl oxidase-like 4 [Source:RGD Symbol;Acc:1308588]
Coordinates
chr1:261840696-261843201:-
Coord C1 exon
chr1:261843039-261843201
Coord A exon
chr1:261840940-261843038
Coord C2 exon
chr1:261840696-261840939
Length
2099 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
ACCTTGCCCCTGTCCCCCAGGTG
3' ss Score
11.39
Exon sequences
Seq C1 exon
GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTTCAGCAGTGTCAGAGGCATGGGCCTGTGCACTGCTCCCACGGCTCGGGGCGCTTCTCGGCCGGCGTTGCCTGCATGAACA
Seq A exon
GTGAGTAATGCGGGTGGGCGGAGGGGTCAGGGAGCAGACACAGGGGCTCCACCATCCTCCAGCTGGGAGCTGAGCTGTCCTGGTCAGATGCAAAGCCTTCCCTGCCCACCTCCCTCATGGTGTTATTGTGAGAACCAAGAAAAGCCCACGGAGCTAGAAGGCGGCCTTGCAGCTTGAGGATTTCGAACGACAGTTTTAAAAGAGTGAAACAGAATAGAAAATGTGGCAGGCAGTCTATTGCTTTTAGGAAGGGTAATGTTTTTTCTCAGAACTGCGTGTGTACTGAGTTACAACATAGGATGAATTGGCTAGTTTGTGGGGAATGTTTTGAAATACACTGTGGAGGTTACCCAGATGTGAGGCACACCAGAGCCTAAGGCCAAGCTGTGGGTTCCCTTCCAAGCCATGGAGATTACCCAAAAGCCTTAAGGACACGGCTGGTTTGTGGCAAGAATTTGCCTCACAGACCCAGATCCTCAGGGTGGCAGCATCTGTTTGACATTGACCAGCAAGGCCTGAGCCAAGATAATTACATCCAGTCCAAAGGCTGCAGGCTGGCACCAACCCCAGAGGCCACTTGACCTTCTTCTCAGCCACTCTCCAACCTGTCAGGGAGCCCTCAGTGTAGCACACCCTGAGGAGAGCCCTGGGTCCCTCCTTCTTACTCTCCCCTGAAGAGGGACAGGATGTCTGTGGTGTCCTCTGCAACCAGGCCTCACAGCATGCTGGTTGCTTGGCAACCTTGGACTTTAACCCCTTCTAGTGCAGCTGTCTTAACGAGCACATTTGATGCCAACAGCTGGTCAGGTGCTGACCAGCAGCCTGTACTCACCCACCTCTCGACTTTCCTCACGTTTCTTGTCCCCCCTCACTCCCTCTGCAAGCTCTCCTTTTCTTTAGGAGCTCTGTCAGACACTGGCCACCTCCTGGCTTTCTCCAACAGAAGACAGGTATCTGGAGTGTGTGTTCAGTGACATGCCAGGCACCATGTAACACTTCAAACTGAGCCAATGAAACAAGCCAGTGCTCCCACCCACTCTCATTGGCACACATACCTAGCCGCATACCTAGGCCCCAAACACCTGAGAGAGAGGCTCCTTTTCTCTTTTGAGGTTTCGTGGCAACAGCAATGGATGCTACATTGACGCTTGAAGGACAGTGATGGTAGAGGCTTCAGAAGAGAGCCCCTTAGAGGAAAGGAAAGAGGCTGGGCTGACAGCGAGACCTAGGCATATGGATTTAAAGAAAATTGTTGTTGTTGTGTGTCTGTGTGTAACTTTCTGGGAGTCAAGTCTCTCCTTCCACTTGGAGTACAAGGGTATGCAGGTTTGCAGAGCAGGCACCTTTCCTGGCTGGTCCACCTTGCTGACCTCAGGTTGGACTTCTGCATGCACAGGTGCGTACACTGGAGATAGCCTCAATGTCTGAGAATGAATGCATGGAGCACTGTGGACGTGGGTAGGCTAGGATGGACCACCCAGAGGGAGCAAGACCCAGAGCTCAGCAGGCTAAACAGCACAGTCGAAGGGCAAGCTCCACAACGGACTCCTTCCATTTTCCCTTCCTATCCTCCCCCTCCAGCTCAACAGACACTCAGAGACTGAGGCCCAGGGAAGGCAGAGACTTGGCTGAAGTAACTGAGTTAGGTATTAGTAAAGCCATAGAGAGCTTTTACCCACTAAGCTACACAAAGGCCCTTTGTAACATGAAAAGCATTCTGGAAGAGAAATATAGCTTATATCCATTTCCTGTTTACTGCAGGCCAGACAGTGCTCTAAGCAAATTACAGATACTGCCTATTAATATCGCCAATATGATTCCTGCCTTGTAGATGACAAAAGGCACAAAACCATTACGCAGTCACAGTGCTGGGACAGTGAACCCCAGCCAAGAATGAATGCTGGCTCCAAACGTAACCGTGACAGCGGAGCTGCCTCCCGGGTGGCAGTGATAGGCTGCTCCCTGTTACTGGACTTGTCTTCACACTCAGTTGCCCTGCTTGTATTCTTTCCGGAGTCTGGGAGTGAGCCCATGCTTATGTTGGAGAACAGGCCCTACCTTCTTACTCCTGTCCCCCCCACCTTGCCCCTGTCCCCCAG
Seq C2 exon
GTGCTCCAGACCTCGTGATGAATGCCCAGCTGGTACAAGAAACGGCCTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGCGCTCATGAGGAAAACTGTCTCTCCAAGTCCGCTGACCACATGGACTGGCCGTACGGACACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCTGACTTCCGTCCCAAGGCTGGACGACACAGCTGGATTTGGCACCAGTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015727:ENSRNOT00000021144:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(49.1=94.5)
A:
NA
C2:
PF0118612=Lysyl_oxidase=PU(38.7=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]