MmuINT0091860 @ mm10
Intron Retention
Gene
ENSMUSG00000025185 | Loxl4
Description
lysyl oxidase-like 4 [Source:MGI Symbol;Acc:MGI:1914823]
Coordinates
chr19:42599877-42602335:-
Coord C1 exon
chr19:42602173-42602335
Coord A exon
chr19:42600121-42602172
Coord C2 exon
chr19:42599877-42600120
Length
2052 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CCTCATCCCCTGTCCCCCAGGTG
3' ss Score
10.23
Exon sequences
Seq C1 exon
GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA
Seq A exon
GTGAGTGAAGGATGGGTGGGTGGCAGGGTCAGGGAGCAGACACAGGGAGCGCTCCAGTTTTCCAGCTGGGAGGCTGAGCTGTCTGTCACTCCCTCATGGAGTTACTGTGAGAACTGAGAAAAGCACAAGAAACTGGAAGAAGGCCTTGCAACTTGATTGTGAACTCTTTTTAAAAAGAGTGCACAGAATAGAAAACATGGCAGGCGATCTACGACATTTAGGAAGGGTAATGTTTTTTCTCAGAACTGTGGGTGTGCTGAGTTACAACATAGAATGAATTTATCGTCTGTGGGGAATACTTTGAAATATGCTGTGGAGGATACACAGATGTGTGGCACACCAGAGCCTAAGGCCAAGCTGTGGGTTCCCGTCCAAGCCGTGGAGTTTACCCAAAAGACTTGAGGACATGGCTGGTTTGTGGCAAGAGATTGCCCCACAGACCCAGATTCTCAGGGTGGCAGCATCTGTTTGACATTGACCAGCAAGGCCTGAGCCAAGGTAATTACATCCAGTCCAAAGGCTGCAGGCTGGCACCAACCCCAGAGGCCACTTGACCTTCTTCCCAGCCACTCTCCAACCTATCAGGGAGCCCTCTGTATAGCACACCCAGAGGAGAGCCCTGGACCCACCCTTCTTAACCTCCCCTGAAGAGGGACAGGATGCTGGTGGTGCCCTCTGCAACCAGGCCTCACATGCTGGTTGCTTGGCAACCTTGGACTTTAACCACTTCCAGTGCAGCTGACATAATGAGCACATTTGTGCCAACAGCCAGCCACCTTTCTCTTGACTTTCCTTACCTTTCTTGTTTCCCCCTCACTCTCTCTGCAAGCTCTCCTTGCCTTTAGGAGCTCAGGTCTGACACTGGCCATATCCTGGCTCTCTCCATCAGAAGCCACAGGAATCTCAAGTGCAGGTTGACAGGCATTGTGTGTTGTAGTGCACTCCAAACCCAGTGAAACAAGCCAGTGGTCCTATCAATCACTCTCATCGGCACACATACCTGGCAGCATACCTAACCCCAAATACCTGTGAGAAAGGCCCCTTTTCTCTTCTGAGGTTATGTGGCAACAGCAATGGATCGCCACGTACTGGTACTGATGCTTGAAGAACAGTGATGGGAGAGGCTTCAGAAGAGAGACCATTAAAGGAGAAGAAAGGGGCTGGGCTGACAGTGAGACTTAGGCACACTGGATTTAAAAACAAAATGTTGTTGTGTGTATGTGTGTACCTTTTTGGGAGTCAGGTCTCTCCTTCCACTTGGAAGACAAGAGTTGAACTCAGGTCCACAGGTTTGCATAGCATGCACTTTTCCTGGCTGGTCCACCTTGCTGTCCTCAGGTTGGACTTCTACATTGCAGAGGTGCACTGGAGATAGCCTGGATGTCCGAGGAATGAGTGCATGGGAGACTATGGAAGTGAGTAGCTAGGATGGACCATCCAGAGGGAGCAAGGCACAGAGCTCAGTGGACTGAACAACACAGTGAGGGGCAGGCTCCACAACCGACTCCTTCCATTTTCCCCTCCTGTCCTCTCCCTCCAGCCCAAAAGACGCTCAGAGACTGAGGCCCAGGGAAAGGCAGAGGCTTGGCTGAAATAACCAAGTTAGATATTAGCAAAGCCTTTGAGAGGTTTTTTTCCCCACTAAGCTACACAAAGGCCCTTTGTAAGATGAAAAGCATTTTATGAAAGAAATATAGCTTATATCCACTTCCTGTTTACTGAAGGCTAGACAATGCTCTAAGCATATTACAGATACTGCTTATTAATATAGCCAATATTATTCCCACCTTGTAGATGACAAGATATGAGGCACAAAAACATTATGCAGTTACAGCGCTGGGACAGTGAGCCTCAGCCAAGAATGAATGCTGGCTCCAAACTTAACCATGACAACAGGCTGCCTCCCAGGTCCTTGTTACTGGACTCACACCTTTCCACTCGGTTGCCCTTCTTGCATTCTTTCAGTAGTCTGGGGGGTGAGGCCGTGCTTATGCTGGATAACAGGCACTGCCTTTCTCACCCCTGCTCCCCACCTCATCCCCTGTCCCCCAG
Seq C2 exon
GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025185:ENSMUST00000026190:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(49.1=94.5)
A:
NA
C2:
PF0118612=Lysyl_oxidase=PU(38.7=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types