BtaINT0087007 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46537971-46543617:+
Coord C1 exon
chr29:46537971-46538155
Coord A exon
chr29:46538156-46543293
Coord C2 exon
chr29:46543294-46543617
Length
5138 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
GCCCTCGTGTCTCCGCGCAGGTC
3' ss Score
10.64
Exon sequences
Seq C1 exon
CTACATCTATTGGACAGAGTGGGGTGGCAAGCCCAGGATCGTGCGGGCCTTCATGGATGGGACCAACTGCATGACGCTGGTGGACAAGGTGGGCCGGGCCAATGACCTCACCATCGACTACGCTGACCAGCGTCTCTACTGGACGGACCTGGACACCAACATGATCGAGTCGTCCAACATGCTGG
Seq A exon
GTGAGAGCCGGTGGGTCCTGCCGGGAGGGGGCACCCCTGGTGGGGTGTCAGCCACCCTCAGCCCCCAAGGCACTGTGCCCTCGGGCTTGCAAGGTGTGGACGGGCCCCGAGTGCTGACCCAGCATGCCACAGAGGTGTCCCTTTCTGCCCCTGCTGCCGTTGTGTAGAGGCCCTGGTGCTGACAGCTGGGTCTAGACCAACCCCAGGCCAGGATTCTAATCTGACCTGACACCACAGAGCATAGGTTTTCAGTGATGGGGAAACTGAGGCCCAGGGAGGTAACGGGACCTGTGTAAGGTCACCGAGCGCTGCTCAGCCCCCAGGACCACACGCTCCGTCTCCATCCAACCCTGAATTCCTCTTGGGTACCAGGCATCGTTCTGGGGCCACTCAACACCCTGGGATTAGATTAAAAACAAAACCCAGGACTTCCCTGGTGGGCCAGTGGTTAGGATTCCACCTGCCAATGCACGGACATAGGTTCAGTCCCTGGTCGGGGAAGATTCCACATGCCGGGGGGCATCTAAGCCCTGCACCACAACTCCTGAAGCCCATGCACTAGAGCCTGTGCTCCCAACAAGGGAAGGGAGTGCTCCCCGTACACGGCAACTAGAGAATGCCCACAGGCAGCAACAAAGACCCAGCATAACTGAAAACACATAAATAAATAATAATTTTAAAAGCCAGGAAAAAAAAAAAACCTTATTCCATATCACCTAGCAGTGAGGGCAGGATTGGATCCTAGAACATGACTGGACTTCTTGGTGGGTGGGGGAGGGTGGCTCTCTTGGGTGGTACCAGTTGGTGGAGCTACCCTGTGCAATTGAGAGACTTTGGCTTCCTTCCTTACCGCCGCGGCTGCCACCTGTGGTGGGCACAGTTGTGCCCACTTTACAGATGAGGAGACTGAGGCCTTGGTGGGCCGAACCACTTGCCCCAGGTACTGTGTGAACAGAGCCAGGGCCAGAAGCTCTGTGTTCTGGTTTCTGCTTGCAGTGGGCTGTACCCGCCCTGCACACTGACTGTCCTGGTTCATGGGGCCCGGAGCGAGGCTTGACTGCGTCTTCGAGGTCACCACGCCAGCCCCGCAGGGAGTTATAAGAGGCTGGTGGCAGGTGGGAAACTTGTTGCAGCACAGCTGTGGTCGCCCGAAACAATTAAGTTCCCTGATTACCCCAGAGTAATGACACACTCAGAGGAAAACCAGTGAAAGCCTTGGAAACCCGCCCAAGCCTTCAGGTCGAGGGCAGTCGGGTGCATCCGGCCGGGCTGTTTTTCTGCTGTGGCAGGTTTCCCGCTGAACAGCACAGACGTGTCCAGAGCACTTGGTTAACAGCAGGGGAGGCCCCCGTGGGAAGAGTGCCTGTGTCTAAGAGCTGAGTGTGCATTGTGAGCCTGGGATTTTTTTTTTTTCACTTTTTTCCTTTTTTAAAAATCATTTTCAAAACATTATTTCAAATTGTGCCATAGATGATTTCCATTCCTCTTCCTCCTGCTCCCACATAGGAGGAGCATGTCCACACGTCTCTGATTTGTTTTCATGGGCTTCATTTTTTTAAAAAATTTTTATTTGGCTGTATGGGGTCTTAGTTGTGACACGAAAGATTTCCCTTCGATCTCTAGTTGCAACATGCAAACTCTTAGTTGTGGCGTGTAGGCTCTAGTTCCCTGATCAGGAATTGAACCCCGGTCTCCTGCATTGGGAATGTGGAGTCTTAGCCCCTGGGCCACCAGGAAGACTCCCATCATTGGCATCATTTTTACCGTGAAATAGAGCATATGTGTATATGGGCTTCTGCAGTGACTCAGCAGTAAAGAATCTGCCTGCAATGCAGGAGACGCAGGTTCGATCCCTGGGTTGGGATGGCAACCCATTCCAGTATTCTTGCCTGGAAAAAAATCCCATGGACAGAAGAGCCTGGCAGGCTATAGTCCATGGGGGTCACAAAGAGTTGGATATGACTGAGTGACTCAGCATGCACAGAGCATATGTGAGGCGTTCGCACAACACACACTTTGACGGGGCAGACTTAGGACCCCACACTGGGGTTGAGGTCGAGCGTCCCCGGCCCCGCACAAGCTCTCTCCCTCCTGCAGGGCTCAGCCCCGCTCTGCGCCCTTTCCACCACGCACCGTGTCTCTCGGCCCTGAGCCTGCCTGTTGCCTCTGTAGCCCCAGCAGCTGCCCACAGGTGTGTGTGTTCCGCACGTGGCTGCTCGGTGGTCACACCCTGGTTCATTTGACACGTCCTCTGCTGCTGGTGTTAGCCTGAGCAGCCGTATCCCCAGATGGGGTCATTGGGCTCCAAGCAAGGTGTGGGCCTGCCCCCTCCCTTCTGGAGGCTGCTGCCTGGGCCCAGTGCCTTTCCATCTTCTGGAGCCTGCCTGCCTCCTTCCTCGTGGCCCCTTCCTCCAACTTCAAAGCCAGCTGTAGTGACCAGCCCCGCTCATGGTCCTGTTCTCTCTACCCTTGTACTTACACCGGGTGTCCTGGGATCATCCAGGATCATCTCTGCAGTTCAGAATCTTTAATTTAGTCACACCTGCAAAGCCCCCAGCCACGTAAGGCATGATGTTCACAAATCCTGGAGATTAGAATGTGGAGCTCTTTGGAGAAGAGGGAGTGAGTGAATGAAAGTCAGTCGTGTCCGACTCTTTGCGACCCCATGGACTATACAGCCTGTGGAATTCTTCAGGCCAGAATATTGGAGTGGGTAGCCTTTCCCTTCTCCAGGGGATCTTCCCAAGCCAGGGATCGAACCCAGGTCTCCTGCATTACAGGTGGATTCTTTGCCAGCTGAGCCACCTGGGAAGTCCAAGAATACTGGAGTGGGTAGCCTGTCCCTTCTCCAGAGGATCTTCCCGACCCAGGAATCGAACCGGGTCTTCTGCATTGCAGGCAGATTCTTTACCAACTGAGCTATGAGGGAAGCCCTGGAGAAGACGGAGAATGCTATTCTGCTCATAACTTCTTCTTGTTGTTCAGTTGCTAAGTTGTGTCTGAATCTTTGCGACCCCAGGGATTGCAGCACTCCAGGCTTCCCTTCCTTCTGTCTCCCAGAGTGTGTTCGTATTCATGTCCATTGAGTAGGTGTTGCTATCTATCTCAGCCTCTGCCACCCCCTTCTCCTTTGGCCTTCAGTCTTTCCCAGCGTCAGGGTCTTTTCCAATGAGTCCCACCTGGTTCCTCTGTCCATGGAATTCTCCAGGCGAGAATACTGGAGTGGGGGCGCTTCCCAGGCGGCTCCATGGTAAAGAATCTGCCTGCTGATGCAGGAGACGCTGGTTCCAACCCGGGTCTGGGAAGATCCCACATGCCTCGGAACAACTAAGCCCACGAGCCACAACTATTGAGCCTGTGCTCTAGAGCCCACAGGCGGCAACTACTGAACCCTCGAGCCTGTGCTCGGCAGCAAGAGAAGCTACCGCAGAGAGAAACTCCCTGCAACCAGAGCATCGCCCCTGCTCACCACAGCTAGAGAAAAGCCAGAGCAGCAGCGAAGCCCCAGCACAGCCAAAACAGATAAATAAGTAAAAGGAATACCGGACTGGGCAGCGGTTCTCTTCTCCAGGGGATCCTCCCAACCCAGGGACTGAACCTGGGTCTCCTGCACATAACTTTTACCAAGCACTTATTTTGTACTGGCGTTTTGACCATTTTACATGCATTCTACATGATCTCACTGAATATTTATCTCAATGATAATCACAGAGCTCACTGATTTTTTAATCACAATTTATTACATTTAAGTATCGTGGGTACCCATGAGGACGCTCTTTTCGTTTTTCAGCTCCTTAGACTGCACCGGCTCTTTGTTGCAGCATGAGGGATCTTCAGTTGCGGCCTCCTTGGTAGCTCACTGGTAAAGAATCTGCCTGCAATTAGGGGGACCTGGTTCGATTCCTGGGTCGGGAAGATCTTCTGGAGAAGGGAAAGGCTACCCACTCCAGTATTCATGGGCTTCCCTGGTGGCTTAGACAGTAAAGAATCTGCCCACAATGCGGGAGACCTGGGTTCAGTCCCTGGCTTGGGGCAATCCCCTGGAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCATGGACAGTTTAGCCCATGGGGTCACAAAGAGTCAGACATGACTGAACGACTTTCACTTTCACTTTGCAATGTCTAGTTCCCTGACCAGGGATTAAACCCAGGCCCCCTGCATTGGGAGTGCAGAGTCTTAACCACTGGACTGCAAGGGAAGTCATGAGGGCACTCTGAAGAATACTCACTTTGCAGATGGGGAGACTGAGGATCAAGGAGCTTACACAGATTGCCCAAGGTCATGGGATCAGTGGAGGAGCAAGGGGACCCAGGCTGACTCCAGAGCCTGGTTCCCATCCCTCTGGTAGACTGCTAGGCAGAAGGTTTAATTTAAAATTTTTTATTGACATGCAGGGAACTGAAGTTCTGCAAGCCTCATGATGTGGCCAAAATAAAATGAAATATTTTATGACATACAAATATAGTAAAGTACAAAAAAGTGGTCAGGTTTGAGAACTTTTACATACGGATACTTGTACATCCATAGAAGCATCAACATAGGCTGTGCAGCTTCCATGCAGATCAAAGCAAGGAAGTTTCCAGCCCCCGAAAGGCTCTCAGTCAGTCTTACCGACCTCCTCAAGGCTCACTGCTGCACTGATGTCTGTCTACATGCTCTAGTTGTGCCATTCTAGAACTTTCTATCATTGACCGTCCGGCGTGTGCTCTTCAGCATCTGGCTTCTTTCCATCTAATGACTGAGACTCACCCACATTGTTACTCTGTTCTGCTGCTGTGTCATTTCCATGGCCTGAAGATTGATCCATTTTTGTTAAACCCATCCTGCTGTTTGGGTTGCTTTCTGCTGTGGCTGTCACACAGTTGCTGCTGTGCACAGTCTCATCTGTGTTGTTTGGGGGAATGCTCCGAGCACGTCTCTTGTGCAGCAGGAGGGGAGCTGCCTGCCCTCAGGGTAGGTGCACATCCAGGCTCAGTGGGCCCTGCCGATTTCCCAAAGTGCTCGCACGCTTTACGAGCCTGACGTAGGCGGCCAGGCTGTGGATTGGCGCCCGTGCGGTGCCCTGGCTGACGCCGCGCCCTCGTGTCTCCGCGCAG
Seq C2 exon
GTCAGGAGCGGGTCGTGATTGCGGATGACCTCCCGCACCCCTTCGGTCTGACCCAGTACAGCGATTACATCTACTGGACAGACTGGAACCTGCACAGCATCGAGCGGGCTGACAAGACCAGCGGCCGGAACCGCACCCTCATCCAGGGCCACCTGGACTTCGTGATGGACATCCTGGTGTTCCACTCCTCCCGCCAGGACGGCCTCAACGACTGCATGCACAATAACGGGCAGTGTGGCCAGCTGTGCCTCGCCGTCCCCAGCGGCCACCGCTGCAGCTGCGCCTCGCATTATACCCTGGACCCCAGCAGCCGCAACTGCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903:ENSBTAT00000007756:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=65.1),PF0005812=Ldl_recept_b=PU(51.4=30.2)
A:
NA
C2:
PF0005812=Ldl_recept_b=PD(45.9=15.6),PF0005812=Ldl_recept_b=WD(100=37.6),PF146701=FXa_inhibition=WD(100=33.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]