GgaINT0059809 @ galGal4
Intron Retention
Gene
ENSGALG00000006998 | LRP5
Description
low-density lipoprotein receptor-related protein 5 precursor [Source:RefSeq peptide;Acc:NP_001012915]
Coordinates
chr5:15800157-15803330:+
Coord C1 exon
chr5:15800157-15800341
Coord A exon
chr5:15800342-15803006
Coord C2 exon
chr5:15803007-15803330
Length
2665 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATC
5' ss Score
5.91
3' ss Seq
ATTTTTGTTAACTTTTGCAGGAC
3' ss Score
8.91
Exon sequences
Seq C1 exon
GTACATGTACTGGACAGAATGGGGAGGTAAACCTAGGATCGTTCGAGCATATATGGATGGAACAAACAGCATCACTTTGGTGGATAAAGTGGGTCGAGCCAATGACCTCACAATTGATTATGCAGACCAACGGCTGTATTGGACTGACTTAGACACCAGCATGATCGAATCGTCAAATATGCTAG
Seq A exon
GTAATCTGCTATTAGATTGCATCACAGAATAATTTACTCCATCAAGTGTAGAAGTTTGCAGTGGCCACAGTAAAGCAACTGAATAGAGCTATAGAGTGTTTTAGTTGAATCCTTGGAATTATTGTCTCCATAATGAGCTGTTAAATCACCTATCTTTTTCCCTAAGATGTTGAGTTTATTACATTCATTAGACTTAAAACCTGCGTGTGACTAATTGGTGGTAAGTAGTAATTGGAAAAAGTTGAAATAACGTGATTAATGTTAAATCTGCATGTATATCTTGTGTATTTTTATATTTTCCATTAGCATTCCATTAGGTATTCATTAATTACTTGCATGTGGTGTGCTATGGTTTAGTAAACTTTCATGTTGAAATCAACATAATAATTAACTGAATGAAAGGGGATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGCTGACATAGAGCTTTTATATCCTTTAACTGTTCTATAATTATAAAGTAGTCTTCAAGGTGTTAGGTGAGGCAGATTTAGGTTCATGTATGAGAAAACAGAGGTTATGTAAGCTTCCAAGTACCACTCAGTGAATCCGTGGTAGAATCAGAGGTGGAATCCAGAAGCTTGTGACTTGACATCATACGTTCCATTTCCAAGGAGAGGCCTTTGTTAGATGGAAATCAGCACCTCTGATATCCCAAAGTAAAAAACAAGGCTGATGAGTACAACATACTTACACCAATATTTAAGGAAACTCAGACAGGATTGTTGTAGCAATGCTCTGGTTGGTGACATGCACTATTTCCCTGCAACCCATTTATTTTTACTTTTATATCTTCCATGAAAAGCTACCAGTGGAATGAGGTTTTTTTTTTTTAAGGTTTCATTATGAGCCCATATATCTTCTGAGTAAGGGGAACCTACTACAAGGATTGATGTGCTTTTATCTGGAGATCTTATGCTTTAGTTCAGAGAGAGAGAGAAGGAGGAAACCTGGAAAAAGAACTGCTCATGTGAGAAAGTCTTTTTTCCACATTTTGAGTGAACTTAACTAGAAACTAGAATTGAACTGAATTAACTTACTAGAAACTGGATAGAATTAGAGCTGTGTCAGCATTTTTACTTACCCTTTGCAATTTCTTGTGGTTTTGTACACAAATACTGAGCTGCAGGTCTTCAATTTTAGCTGATGACCTTAAATATGTTGAGTTACTTTGATAGTTTCTTGGCAGACTGCTGTGTGTCCAAGAAAAAGAAGTATTAGAAGGAATCACACATTATTCTGGTGATTACTATATGTCAGTTTTGACTTATGTGTACGTTGTCTTGATCTGCAGGTACAGTAGAACACTGATGTTTATTCAAAAGACGGTGTTAGAAATGGATGTTTAGAGCAAGGATGTTCTAAAAAGCCAAAACAAAAAAAAAAAAACACAACAATTAAAGCTCAGGAGAACAGAGCCATGCAGTTCTGGATTCCAAGGCTAGTGGCGTCTTTGCATCGCTTGCATATGTGGCTTTGGGATAAGTTCTGCTGAATGAATGCTGCTACTTAGAAATTGCATTAAGGTTGCTTCTTTTTCTAGAGTTTTGGTGGGGGCTTTTTTCCATCCAGTGTATGATCTGTCAGAGCTCTCGCTAAAATTCTGTATTTACATGGAGAGACGAAGTTGCTGGAGGCGAATTTGGACTAGAAGCTGTTTGTGGTATTGAGAAGAAACTAATATTCAAACAATCTGTGGTAAATTAAACAAGTTTTTAAGCAGAACCTATAGTTAACATTAGTTGGGTGAGAAGGGGTGCTGAAGCTAACAAAGCTGTGTGCTTGTATTTTTAGTTAGCAGGTTCTAAAGACTTGGGTAGGCTGAGCAAGTGGGCTCAGCAATTTAAGGCAGTGTTGTTAGACTAGGATTGAAAATCGTGCTCTGTAGAATGTGGTATTGGATACTTGTGGGGGTAAGGGACTTACAGTACTGATAAAGGCTTCATCTTTATAAAAAGTGGCAGATTCATGGAAGTTCGTGTTTGAAAATGTTTAGGGGATTTATTTATATTAAGACTTTGGTAGTGGATCTCTGGCAGACGCTGCCTGATGCTCTAGAGGTATTAAATCTGTTTTGAATCTTGCTAACTGAGCCACCAAGTGTGACAGTGTTGGGATTTCTGCCAAACAAACGGTTTCAAAATCACTTTAGGTTTCTGTGTGTTGAATTGCACTGCAAATGATTTGTTTCTTGAGTAAAATGCTGTAATTTCTCTTTGTTGGTTCTCTGTGAATCTCAGGTTTGGTATTTATTGCTGTTGTGCATATTGATTTTGTTGTTGATCTGAGTGATTCTTGGAGCTGATAGTGTTCTTGAATATGCTTTTCAGTATCTAATTGGGGTGTTACGCATAAGAAATAGAGCAGTATTTATTGAAATGGCAATATACTGTCACAATTTCAAATTGCTCCATAGTCAAGAGGTTATCAGGATAAGGTTTTTAAATGCAAATACATAGGTTACTTGTTCAGCAGGTACTGCTTAATAATGAATCCCATGATAATGACTGAGTTTTGTTTTAAAAAAGAAAAGACTTTTTTTATTGTTCATCGGGGCATATTTACTGCATCATGGCCTTATACTTCATTTCATGACCTGAGAATTGTGCTGTACTTGATTTTTGTTAACTTTTGCAG
Seq C2 exon
GACAGGAACGAGAAATCATAGCAGATGATCTACCTCATCCATTTGGATTGACCCAGTACAGTGACTACATCTACTGGACAGACTGGAATCTTCACAGTATAGAAAGAGCAGACAAGACCAGTGGGAAGAACAGGACACTTATTCAGGGCCATCTGGATTTTGTGATGGATATATTGGTCTTCCATTCTTCACGTCAGGATGGCTTGAATGATTGTGTGCAAAATAATGGTCATTGTGGTCACCTGTGCCTTGCCATACCAAATGGATTTAGATGTGGCTGTGCTGCTCACTATACCTTGGATCCCAACAGCAGGAACTGCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006998:ENSGALT00000011330:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=65.1),PF0005812=Ldl_recept_b=PU(51.4=30.2)
A:
NA
C2:
PF0005812=Ldl_recept_b=PD(45.9=15.6),PF0005812=Ldl_recept_b=WD(100=37.6),PF146701=FXa_inhibition=WD(100=33.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]